Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATAD3A	Gene	0	34.86	78.50	77.98	136.15	91.77	63.51	60.81
2	378756	Transcript	0	0.38	3.84	0.34	2.32	4.45	1.54	1.01
3	378759	Transcript	0	3.19	25.60	6.23	27.01	3.61	8.37	6.91
4	378755	Transcript	0	0	0	0	0	0	0	0
5	339113	Transcript	0	0.30	0.27	0.77	0.89	0.64	0.31	2.49
6	ER1a	ExonRegion	0	0.00	0.39	0.00	0.90	0.00	0.64	0.00
7	ER1b	ExonRegion	0	2.32	11.09	4.81	15.38	2.40	12.84	3.52
8	E1a_E3a	KnownJunction	0	24.05	40.96	38.23	71.20	31.77	36.58	18.04
9	ER2a	ExonRegion	0	0.61	0.54	0.75	1.78	1.28	0.63	2.11
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.79	0.00	0.00	0.00	2.87
11	ER3a	ExonRegion	0	21.22	49.65	47.50	81.55	41.86	43.21	26.90
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.63	0.00	0.00	0.00
13	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E3a_E18a	NovelJunction	1	3.77	10.30	4.76	42.61	2.88	34.65	22.79
15	E4_Aa	NovelBoundary	0	35.00	55.80	57.37	111.53	16.76	44.14	33.79
16	ER4a	ExonRegion	0	19.27	50.48	27.67	91.42	15.96	46.11	24.70
17	E4_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER4b	ExonRegion	0	28.55	83.68	62.02	136.75	32.49	69.65	40.05
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	45.29	64.93	106.50	149.26	64.76	63.65	67.80
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	46.84	64.13	82.69	122.34	103.36	49.64	47.38
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER7a	ExonRegion	0	53.53	100.33	112.42	209.96	127.19	84.34	90.57
25	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E7a_E9a	NovelJunction	0	0.00	3.05	0.72	11.49	0.00	7.96	2.21
27	ER8a	ExonRegion	0	65.13	122.04	144.43	177.55	179.65	95.82	97.99
28	E8a_E9a	KnownJunction	0	52.71	130.70	120.11	182.43	178.77	86.08	116.77
29	E8a_E10a	NovelJunction	1	0.00	1.60	5.46	3.14	0.00	1.39	10.12
30	ER9a	ExonRegion	0	59.53	125.89	121.64	200.59	158.47	85.27	101.65
31	E9a_E10a	KnownJunction	0	68.70	44.92	117.33	78.89	161.90	31.60	73.56
32	ER10a	ExonRegion	0	81.91	147.70	158.64	228.61	226.76	102.51	128.68
33	E10a_E11a	KnownJunction	0	89.59	186.13	181.25	283.97	304.64	127.25	173.41
34	ER11a	ExonRegion	0	102.06	182.10	225.35	311.64	258.52	132.94	186.38
35	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER12a	ExonRegion	0	67.31	121.52	140.80	231.52	152.32	107.53	110.62
37	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER13a	ExonRegion	0	59.10	109.59	147.59	192.87	182.47	116.19	129.41
39	E13a_E14a	KnownJunction	0	58.85	128.36	142.40	203.78	197.24	140.40	124.11
40	ER14a	ExonRegion	0	59.35	156.79	144.12	208.26	194.42	119.03	131.37
41	E14a_E15a	KnownJunction	1	4.71	53.54	9.33	53.34	2.86	15.44	9.60
42	E14a_E16a	KnownJunction	0	44.83	123.24	150.40	183.76	171.65	85.09	105.24
43	E15_Aa	NovelBoundary	0	22.77	13.08	12.67	10.13	15.28	4.96	11.85
44	ER15a	ExonRegion	0	4.00	21.62	7.10	21.61	7.06	9.67	7.24
45	E15a_E16a	KnownJunction	0	0.87	1.63	2.27	6.07	0.90	0.00	3.88
46	ER16a	ExonRegion	0	54.06	129.74	140.57	216.73	163.89	98.76	104.73
47	E16a_E17a	KnownJunction	0	49.95	96.92	129.59	166.12	158.86	74.37	90.12
48	E16a_E18a	NovelJunction	1	0.82	4.76	1.38	19.99	0.00	4.85	3.53
49	ER17a	ExonRegion	0	38.36	88.39	101.58	176.12	134.39	82.73	71.61
50	E17a_E18a	KnownJunction	0	43.59	127.65	92.42	192.24	86.98	107.79	70.42
51	ER18a	ExonRegion	0	21.82	69.67	53.39	123.34	71.01	57.11	42.00
52	ER18b	ExonRegion	0	0.77	7.29	0.68	3.74	8.91	2.45	2.02