Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CDC2L2	Gene	0	41.87	34.16	43.51	51.36	37.90	38.45	21.78
2	378638	Transcript	0	0	0	0	0	0	0	0
3	356200	Transcript	0	37.19	43.25	47.30	80.46	34.12	63.45	28.05
4	357760	Transcript	1	5.31	7.51	8.57	10.25	9.46	0.53	1.00
5	378635	Transcript	0	0	0	0	0	0	0	0
6	378633	Transcript	0	0	0	0	0	0	0	0
7	401097	Transcript	0	0	0	0	0	0	0	0
8	378630	Transcript	0	0	0	0	0	0	0	0
9	317673	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	341028	Transcript	0	0	0	0	0	0	0	0
11	401096	Transcript	0	5.82	10.69	3.84	15.84	6.54	5.95	2.36
12	ER1a	ExonRegion	1	34.37	7.29	32.42	16.79	13.77	14.79	3.10
13	ER1b	ExonRegion	1	44.19	8.50	38.61	20.57	16.20	17.16	4.05
14	ER1c	ExonRegion	1	45.89	10.91	37.80	24.32	9.64	16.63	6.62
15	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E1b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1c_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER1d	ExonRegion	0	1.69	2.43	0.41	0.00	0.81	1.23	0.67
19	ER1e	ExonRegion	0	1.60	2.33	0.06	0.00	0.40	0.41	0.67
20	E2_Aa	NovelBoundary	1	22.41	24.43	6.24	28.53	11.07	16.27	4.03
21	ER2a	ExonRegion	0	7.72	9.40	2.48	16.28	9.10	6.33	2.96
22	E2_Da	NovelBoundary	1	22.48	40.06	10.76	30.07	7.58	25.00	2.41
23	E2a_E3b	KnownJunction	0	3.92	11.98	5.20	15.39	3.99	5.57	1.76
24	ER3a	ExonRegion	0	4.46	2.92	3.39	5.24	1.30	2.45	1.48
25	ER3b	ExonRegion	0	53.28	35.50	57.85	48.95	11.90	45.80	15.78
26	E3_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E3a_E3c	KnownJunction	0	30.01	32.24	47.02	42.67	14.55	39.66	13.30
28	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER3c	ExonRegion	0	7.96	2.68	4.73	3.71	1.69	1.94	1.67
30	E3_Ac	KnownBoundary	1	15.29	12.61	19.04	15.31	1.96	7.66	2.77
31	ER3d	ExonRegion	0	35.05	34.62	66.53	49.69	23.75	47.49	21.57
32	E3b_E4a	KnownJunction	0	36.40	39.09	72.90	54.32	36.24	52.15	32.73
33	ER4a	ExonRegion	0	31.32	45.16	55.49	59.59	15.37	41.04	25.27
34	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER5a	ExonRegion	0	33.31	45.46	58.85	68.21	19.59	56.43	24.68
36	E5_Da	NovelBoundary	1	30.78	23.51	75.73	34.78	4.36	36.31	30.51
37	E5a_E6a	KnownJunction	0	47.38	80.00	84.94	124.02	50.74	83.24	36.76
38	E5a_E8a	NovelJunction	0	2.87	1.05	2.23	8.91	6.36	10.61	0.00
39	E5b_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER5b	ExonRegion	0	4.20	3.28	6.23	2.33	0.86	0.16	0.99
41	Ix_AR2	ActiveIntronRegion	0	13.04	3.42	20.03	6.94	3.82	6.04	1.89
42	ER6a	ExonRegion	0	18.87	30.07	32.93	47.83	12.08	39.75	14.92
43	E6_Da	NovelBoundary	0	16.37	6.59	16.74	17.50	7.33	15.17	5.75
44	E6b_E7a	KnownJunction	1	5.89	8.04	8.98	10.84	12.56	0.00	0.77
45	E6b_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER6b	ExonRegion	0	20.88	19.84	28.45	31.80	13.77	27.18	15.18
47	ER7a	ExonRegion	0	4.72	6.99	8.15	9.66	6.36	1.05	1.23
48	ER7b	ExonRegion	0	18.40	9.63	21.58	22.67	9.49	16.52	13.85
49	E7_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E7a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER7c	ExonRegion	0	3.83	5.71	4.01	5.59	10.11	2.38	2.40
52	E7b_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER8a	ExonRegion	0	9.03	15.32	4.37	13.05	2.15	7.83	8.91
54	E8_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER8b	ExonRegion	0	24.20	30.78	14.56	24.46	2.24	16.88	24.42
57	E8_Db	NovelBoundary	0	15.44	19.70	20.64	11.35	7.24	5.63	4.93
58	E8b_E9a	KnownJunction	0	19.66	23.41	15.12	19.21	4.38	18.25	20.08
59	ER9a	ExonRegion	0	7.01	16.20	5.55	9.85	1.00	11.35	9.83
60	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER10a	ExonRegion	0	3.29	6.65	3.77	7.10	3.61	4.33	1.10
62	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER11a	ExonRegion	0	17.92	11.65	16.64	23.45	5.18	9.94	7.47
64	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER12a	ExonRegion	0	56.15	31.70	41.03	49.62	39.79	23.21	15.70
66	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER13a	ExonRegion	0	143.15	66.47	99.64	82.38	87.93	84.39	42.14
68	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER14a	ExonRegion	0	141.52	73.71	112.76	102.33	126.28	87.53	61.29
70	E14_Da	NovelBoundary	0	122.75	36.83	97.93	49.52	30.08	37.09	28.83
71	E14a_E15a	KnownJunction	0	43.81	37.83	25.72	37.09	104.31	42.18	35.21
72	Ix	Intron	0	26.29	16.72	27.18	20.59	5.12	11.22	9.86
73	Ix_AR1	ActiveIntronRegion	0	26.49	16.85	27.37	20.75	5.17	11.30	9.93
74	ER15a	ExonRegion	0	27.27	21.97	22.48	30.02	127.22	19.75	19.98
75	E15_Da	NovelBoundary	0	27.67	44.74	31.41	47.08	5.35	26.10	9.66
76	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	Ix	Intron	0	11.18	17.04	19.78	29.93	5.21	15.88	8.69
78	Ix_AR1	ActiveIntronRegion	0	11.28	17.18	19.96	30.20	5.25	16.03	8.78
79	E16_Aa	NovelBoundary	0	14.19	28.95	24.82	62.47	4.70	40.95	8.56
80	ER16a	ExonRegion	0	50.71	43.33	38.77	86.40	98.05	53.61	24.10
81	E16a_E17a	KnownJunction	0	81.88	47.50	64.87	102.35	77.39	47.01	33.35
82	ER17a	ExonRegion	0	50.67	49.34	45.94	71.37	68.57	43.18	22.83
83	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	E18_Aa	NovelBoundary	0	26.47	66.23	44.85	100.16	15.40	65.28	30.84
85	ER18a	ExonRegion	0	72.88	75.24	75.25	91.69	66.91	59.86	37.89
86	E18_Da	NovelBoundary	0	5.91	11.45	3.15	6.91	4.52	6.67	5.02
87	E18a_E19a	KnownJunction	0	77.07	80.63	92.98	123.07	49.98	79.01	32.49
88	ER19a	ExonRegion	0	72.18	47.60	99.83	59.03	48.50	40.50	43.10
89	E19_Ab	KnownBoundary	0	57.63	0.00	79.96	0.00	44.03	0.00	47.98
90	ER19b	ExonRegion	0	35.75	25.88	44.08	32.19	22.34	19.13	24.07
91	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	ER20a	ExonRegion	0	28.73	16.69	40.86	31.43	37.94	28.98	19.86
93	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	ER21a	ExonRegion	0	52.43	50.51	65.26	83.20	29.51	74.92	34.66
95	E21_Da	KnownBoundary	0	60.05	42.14	67.81	78.62	25.38	62.60	38.57
96	E21_Db	KnownBoundary	0	78.03	86.67	105.56	174.76	80.96	118.24	60.55
97	ER21b	ExonRegion	0	76.10	76.91	97.28	169.11	63.36	107.70	52.85
98	ER21c	ExonRegion	0	66.42	83.82	89.87	157.21	66.56	124.96	54.44