Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GYS1	Gene	0	115.34	122.55	91.05	45.33	136.57	46.75	216.43
2	323798	Transcript	0	47.11	66.82	34.09	23.09	61.88	23.29	107.22
3	263276	Transcript	0	0.80	1.21	0.00	0.00	0.00	1.63	0.00
4	ER1a	ExonRegion	1	19.78	15.86	15.44	5.78	37.74	20.10	39.45
5	E1_Ab	KnownBoundary	1	49.30	37.36	38.08	9.81	65.86	30.61	83.51
6	ER1b	ExonRegion	0	35.61	58.50	35.40	18.67	43.70	29.74	86.26
7	E1a_E2a	KnownJunction	0	35.40	79.42	31.66	27.55	73.31	27.71	98.89
8	ER2a	ExonRegion	0	59.25	93.30	40.88	26.70	64.50	30.45	122.12
9	E2a_E3a	KnownJunction	0	65.34	95.58	44.63	31.24	82.78	23.50	147.60
10	E2a_E4a	KnownJunction	0	0.80	1.21	0.00	0.00	0.00	1.63	0.00
11	I2_SR3	SilentIntronRegion	0	35.07	18.82	10.59	4.67	12.14	7.17	17.29
12	I2_AR3	ActiveIntronRegion	1	36.49	18.64	11.70	7.86	17.59	8.72	35.87
13	I2_SR4	SilentIntronRegion	0	23.89	19.49	9.10	4.46	12.14	11.53	24.00
14	I2_AR4	ActiveIntronRegion	0	22.71	16.74	11.47	4.96	7.81	11.62	19.16
15	E3_Aa	NovelBoundary	0	26.45	22.23	11.67	6.53	13.19	13.13	30.37
16	ER3a	ExonRegion	0	76.76	111.83	58.43	32.80	106.82	38.87	177.86
17	E3a_E4a	KnownJunction	0	64.29	108.19	48.96	44.62	77.02	30.52	166.72
18	I3_AR1	ActiveIntronRegion	0	12.38	10.25	3.63	3.82	2.19	10.11	12.57
19	ER4a	ExonRegion	0	72.63	119.42	62.21	47.04	124.71	39.92	232.30
20	E4a_E5a	KnownJunction	1	83.78	134.38	70.08	53.91	145.14	21.84	216.68
21	E5_Aa	NovelBoundary	1	9.31	2.23	2.40	2.76	2.12	12.76	13.39
22	ER5a	ExonRegion	0	117.35	145.71	100.67	50.70	150.26	46.70	249.91
23	E5a_E6a	KnownJunction	0	158.27	161.81	151.42	43.54	217.55	31.76	258.77
24	E5a_E7a	NovelJunction	0	6.53	1.26	3.72	6.53	2.12	0.00	18.80
25	E5a_E9a	NovelJunction	1	1.03	9.38	4.10	1.46	0.00	14.26	3.00
26	I5_AR1	ActiveIntronRegion	0	19.43	9.37	9.68	9.98	7.29	13.31	21.20
27	E6_Aa	NovelBoundary	1	77.47	6.52	56.91	3.33	7.12	4.42	7.97
28	ER6a	ExonRegion	0	161.22	137.86	128.75	34.25	186.64	31.76	216.43
29	E6a_E7a	KnownJunction	0	174.39	105.11	135.10	36.33	166.12	32.83	213.21
30	ER7a	ExonRegion	0	146.35	127.39	129.36	39.51	180.80	38.59	222.69
31	E7_Da	NovelBoundary	1	47.93	1.21	49.12	1.14	2.05	11.68	11.59
32	E7a_E8a	KnownJunction	0	112.54	126.50	112.61	31.29	251.69	38.14	248.51
33	ER8a	ExonRegion	0	171.07	138.93	139.81	57.12	258.25	37.18	322.20
34	E8_Da	NovelBoundary	1	27.34	9.80	13.09	1.68	13.60	14.93	40.64
35	E8a_E9a	KnownJunction	0	215.87	141.37	152.86	62.36	173.73	31.17	376.21
36	E9_Aa	NovelBoundary	0	35.88	34.00	17.42	5.74	7.63	17.63	39.35
37	ER9a	ExonRegion	0	188.79	170.48	156.20	52.89	214.18	41.17	358.79
38	E9a_E10a	KnownJunction	0	148.19	176.28	143.63	45.08	237.51	58.37	311.24
39	ER10a	ExonRegion	0	186.88	197.67	167.28	65.99	257.52	66.14	426.19
40	E10a_E11a	KnownJunction	0	226.28	208.07	180.00	84.09	310.87	53.47	493.96
41	E11_Aa	NovelBoundary	1	90.93	4.78	65.63	5.72	0.00	10.64	6.71
42	ER11a	ExonRegion	0	213.32	173.16	176.68	57.68	298.00	54.95	430.18
43	E11_Da	NovelBoundary	1	75.57	1.60	62.37	3.14	1.06	10.85	3.11
44	E11a_E12a	KnownJunction	0	172.41	159.68	169.46	61.71	273.80	56.23	369.19
45	E11a_E13a	NovelJunction	1	3.40	13.56	2.34	10.13	0.00	4.48	16.29
46	ER12a	ExonRegion	0	131.18	145.71	122.79	49.30	201.28	34.11	303.83
47	E12a_E13a	KnownJunction	0	105.83	126.29	104.89	45.81	180.96	28.38	296.96
48	ER13a	ExonRegion	0	121.58	137.04	97.08	49.59	168.52	35.63	267.02
49	E13a_E14a	KnownJunction	0	117.31	136.30	103.29	37.17	159.99	32.99	243.56
50	E14_Aa	NovelBoundary	0	3.54	8.09	5.81	4.77	0.00	16.54	4.97
51	ER14a	ExonRegion	0	96.03	114.63	69.64	40.19	100.33	39.12	172.34
52	E14_Da	NovelBoundary	0	0.72	6.75	0.89	10.86	4.26	16.80	3.55
53	E14a_E15a	KnownJunction	0	137.06	131.02	110.51	65.24	103.83	43.25	272.08
54	ER15a	ExonRegion	0	102.33	107.37	81.52	54.85	126.36	32.63	239.36
55	E15a_E16a	KnownJunction	0	79.74	100.15	55.94	45.03	134.42	28.06	212.71
56	ER16a	ExonRegion	0	125.75	126.18	92.96	51.94	127.25	58.98	207.15
57	ER16b	ExonRegion	0	9.37	2.67	2.98	1.00	5.02	3.43	4.45
58	IG32	Intergenic	0	15.96	10.04	10.64	12.12	1.36	33.16	11.19
59	IG32_AR9	ActiveIntergenicRegion	0	3.00	0.00	0.62	0.00	1.62	11.03	0.98
60	IG32_SR7	SilentIntergenicRegion	0	22.19	12.63	10.83	15.00	1.32	40.06	13.51
61	IG32_SR6	SilentIntergenicRegion	0	0.00	0.00	3.26	2.49	0.00	8.05	5.23
62	IG32_AR7	ActiveIntergenicRegion	0	0.00	0.00	3.39	2.49	0.00	8.58	5.40
63	IG32_SR5	SilentIntergenicRegion	0	0.77	0.00	3.39	2.49	0.00	8.58	5.40
64	IG32_AR6	ActiveIntergenicRegion	0	0.77	0.00	3.16	2.49	0.00	8.58	5.40
65	IG32_SR4	SilentIntergenicRegion	0	0.77	0.00	2.54	2.13	0.00	8.02	5.09
66	IG32_SR3	SilentIntergenicRegion	0	2.14	4.50	9.98	9.47	2.36	11.83	2.08
67	IG32_AR4	ActiveIntergenicRegion	0	4.92	10.85	16.39	12.39	3.24	37.60	4.63
68	IG32_SR2	SilentIntergenicRegion	0	9.95	15.08	22.30	14.41	2.11	50.03	12.70
69	IG32_AR3	ActiveIntergenicRegion	0	12.61	13.65	21.76	11.22	2.24	46.95	15.67
70	IG32_SR1	SilentIntergenicRegion	0	11.01	10.93	18.85	11.22	2.43	35.76	14.17
71	IG32_AR2	ActiveIntergenicRegion	0	9.30	6.80	15.11	7.86	1.62	18.27	13.29