Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GAPDHS	Gene	0	1.88	2.96	1.93	1.70	15.31	1.05	6.37
2	222286	Transcript	0	0.93	1.43	0.91	0.95	8.91	0.46	3.12
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.23	0.00	1.96
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.90	0.00	1.42
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	0.00	0.00	0.53	0.00	1.28	0.00	1.06
8	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER4a	ExonRegion	0	0.00	0.00	0.01	0.00	0.76	0.00	0.48
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I4	Intron	0	4.16	3.33	3.81	1.54	25.46	1.47	11.86
12	I4_AR2	ActiveIntronRegion	0	9.44	6.35	8.50	2.67	57.16	3.04	24.85
13	E5_Aa	NovelBoundary	0	8.71	2.55	4.96	0.00	48.30	0.00	15.21
14	ER5a	ExonRegion	0	0.00	0.97	0.93	0.00	23.70	0.00	2.77
15	E5_Da	NovelBoundary	0	2.89	2.55	4.11	0.00	47.47	0.00	16.48
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	0.00	0.00
17	I5	Intron	0	0.73	0.00	1.23	0.00	38.78	0.00	1.91
18	I5_AR1	ActiveIntronRegion	0	0.75	0.00	1.25	0.00	39.64	0.00	1.95
19	E6_Aa	NovelBoundary	0	3.72	3.89	0.73	1.16	58.09	1.42	13.59
20	ER6a	ExonRegion	0	1.81	5.50	1.16	1.55	33.97	0.00	5.60
21	E6_Da	NovelBoundary	0	3.74	6.57	5.98	1.44	50.53	2.76	13.77
22	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	0.00	0.00
23	I6	Intron	0	2.03	3.29	1.77	2.26	43.78	1.11	13.54
24	I6_AR1	ActiveIntronRegion	0	2.04	3.31	1.78	2.27	44.00	1.12	13.62
25	E7_Aa	NovelBoundary	0	14.60	12.19	14.40	15.36	69.25	1.47	75.04
26	ER7a	ExonRegion	0	3.44	5.35	1.45	5.70	32.59	1.14	5.32
27	E7_Da	NovelBoundary	0	22.50	24.27	13.62	13.06	93.04	6.06	65.32
28	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.95	0.00	0.00
29	I7	Intron	0	7.87	7.01	5.78	8.14	61.53	3.87	34.25
30	I7_AR1	ActiveIntronRegion	0	7.92	7.05	5.81	8.18	61.85	3.89	34.44
31	E8_Aa	NovelBoundary	0	9.83	8.70	7.73	8.83	56.85	4.82	27.39
32	ER8a	ExonRegion	0	1.15	6.07	2.60	4.35	25.19	0.61	12.04
33	E8_Da	NovelBoundary	0	8.28	10.27	8.95	2.95	26.53	6.19	22.34
34	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	0.00	0.00
35	I8	Intron	0	2.03	4.26	2.77	1.64	26.31	1.62	12.67
36	I8_AR1	ActiveIntronRegion	0	2.05	4.30	2.80	1.66	26.55	1.63	12.80
37	E9_Aa	NovelBoundary	0	7.69	9.14	10.98	0.00	35.89	7.13	32.68
38	ER9a	ExonRegion	0	4.06	6.80	6.26	2.91	28.43	1.13	14.37
39	E9_Da	NovelBoundary	0	7.43	11.80	11.28	2.65	32.16	10.85	33.79
40	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	I9	Intron	0	9.67	6.63	11.25	4.60	48.70	2.14	26.12
42	I9_AR1	ActiveIntronRegion	0	9.70	6.66	11.30	4.62	48.89	2.15	26.22
43	E10_Aa	NovelBoundary	0	18.48	4.89	18.67	8.29	75.59	7.91	43.02
44	ER10a	ExonRegion	0	4.52	0.00	2.38	3.70	21.92	2.66	9.31
45	E10_Da	NovelBoundary	0	10.13	11.77	10.13	4.39	29.81	9.11	37.96
46	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.97	0.00	0.86
47	I10	Intron	0	7.15	1.01	5.03	1.04	18.76	1.02	8.90
48	I10_AR1	ActiveIntronRegion	0	7.26	1.04	5.11	1.06	19.07	1.05	9.04
49	E11_Aa	NovelBoundary	0	1.75	3.07	10.19	9.78	36.68	5.76	17.63
50	ER11a	ExonRegion	0	4.61	5.39	3.78	1.72	13.30	4.21	10.33