Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	APLP1	Gene	0	6.78	2.07	0.92	1.82	45.97	3.33	15.88
2	221891	Transcript	0	3.14	1.09	0.81	1.28	52.57	2.11	17.59
3	IG47_AR1	ActiveIntergenicRegion	0	12.44	5.48	0.33	1.07	0.28	11.59	0.14
4	IG47_SR2	SilentIntergenicRegion	0	10.42	1.91	0.34	0.93	0.00	0.60	0.40
5	ER1a	ExonRegion	0	1.02	0.38	0.00	0.00	0.75	0.05	0.75
6	E1a_E2a	KnownJunction	0	0.00	1.26	0.00	0.00	3.18	1.15	2.57
7	ER2a	ExonRegion	0	2.09	1.28	0.71	1.92	10.52	1.88	3.37
8	E2a_E3a	KnownJunction	0	0.00	1.26	0.00	0.00	14.85	4.45	9.73
9	I2	Intron	0	17.59	4.24	1.44	0.87	2.32	1.70	0.00
10	I2_SR1	SilentIntronRegion	0	13.17	4.44	1.37	0.27	0.26	1.02	0.00
11	I2_AR1	ActiveIntronRegion	0	38.96	5.46	3.49	1.25	0.40	1.94	0.00
12	I2_SR2	SilentIntronRegion	0	27.35	5.71	1.74	2.17	6.01	3.66	0.00
13	E3_Aa	NovelBoundary	0	13.05	1.63	0.00	1.41	0.00	0.00	0.00
14	ER3a	ExonRegion	0	7.52	1.92	0.39	0.77	20.73	3.65	7.01
15	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	27.11	1.47	8.94
16	I3_SR1	SilentIntronRegion	0	9.87	1.87	0.19	1.91	0.00	2.43	0.28
17	E4_Aa	NovelBoundary	0	11.45	0.00	2.30	0.00	0.00	4.61	0.00
18	ER4a	ExonRegion	0	7.34	2.46	0.00	1.68	37.62	4.69	16.75
19	E4_Da	NovelBoundary	0	16.52	5.49	0.00	1.65	0.00	4.90	0.85
20	E4a_E5a	KnownJunction	0	0.00	1.05	0.00	0.00	41.24	0.00	12.88
21	I4	Intron	0	12.89	2.47	0.52	1.08	0.16	0.00	0.00
22	I4_SR1	SilentIntronRegion	0	13.23	2.53	0.54	1.11	0.16	0.00	0.00
23	E5_Aa	NovelBoundary	0	18.28	5.81	1.90	4.69	0.00	4.02	0.00
24	ER5a	ExonRegion	0	3.33	2.72	0.00	0.71	43.39	1.39	16.86
25	E5_Da	NovelBoundary	0	8.83	10.17	1.78	3.03	1.18	5.71	0.00
26	E5a_E6a	KnownJunction	0	0.00	1.16	0.00	0.00	43.89	0.00	17.37
27	E6_Aa	NovelBoundary	0	9.98	0.97	2.07	0.00	0.00	1.66	0.00
28	ER6a	ExonRegion	0	6.71	1.03	1.11	0.54	60.55	2.92	22.13
29	E6_Da	NovelBoundary	0	11.73	1.52	1.58	0.00	0.00	1.58	0.89
30	E6a_E7a	KnownJunction	0	0.83	0.00	0.60	0.00	81.15	5.36	25.77
31	I6	Intron	0	18.03	4.96	1.81	2.74	0.19	3.12	0.57
32	I6_SR1	SilentIntronRegion	0	20.14	3.82	1.70	2.87	0.14	3.22	0.51
33	I6_AR1	ActiveIntronRegion	0	14.22	7.23	2.05	2.51	0.27	2.98	0.70
34	E7_Aa	NovelBoundary	0	14.39	5.18	3.55	0.00	1.15	1.61	0.89
35	ER7a	ExonRegion	0	14.55	2.09	2.21	3.86	76.01	4.45	31.76
36	E7_Da	NovelBoundary	0	19.01	5.96	2.90	0.00	1.15	0.00	0.00
37	E7a_E8a	KnownJunction	0	2.02	0.00	2.90	1.60	94.75	4.61	34.28
38	I7	Intron	0	10.82	1.80	0.76	1.62	0.30	1.58	0.25
39	I7_AR1	ActiveIntronRegion	0	16.64	1.28	1.76	3.43	0.26	3.11	0.00
40	E8_Aa	NovelBoundary	0	16.76	7.54	2.08	7.10	2.10	5.49	0.00
41	ER8a	ExonRegion	0	3.17	0.05	1.75	1.73	91.93	4.53	34.83
42	E8_Da	NovelBoundary	0	19.96	6.70	2.04	3.12	0.00	6.83	1.58
43	E8a_E9a	KnownJunction	0	1.03	0.00	0.00	3.20	81.93	1.66	25.28
44	I8	Intron	0	18.84	3.27	0.97	1.44	0.72	4.01	0.19
45	I8_SR1	SilentIntronRegion	0	18.93	3.29	0.97	1.45	0.72	4.03	0.20
46	E9_Aa	NovelBoundary	0	19.83	1.63	0.80	0.00	3.43	1.37	0.00
47	ER9a	ExonRegion	0	7.88	0.64	1.59	3.76	72.72	0.40	21.73
48	E9a_E10a	KnownJunction	0	0.00	1.02	0.00	2.55	44.33	1.31	28.43
49	ER10a	ExonRegion	0	8.42	1.45	0.20	1.35	58.32	1.43	21.11
50	E10a_E11a	KnownJunction	0	0.00	1.08	0.89	0.00	53.21	1.31	19.36
51	I10	Intron	0	26.07	2.90	2.45	1.69	0.68	3.69	0.28
52	I10_AR1	ActiveIntronRegion	0	26.14	2.90	2.46	1.69	0.68	3.70	0.28
53	E11_Aa	NovelBoundary	0	37.82	4.86	2.24	7.80	0.00	5.20	0.00
54	ER11a	ExonRegion	0	7.50	1.69	1.56	3.68	81.97	2.15	29.88
55	E11_Da	NovelBoundary	0	20.71	0.00	0.70	0.00	1.11	2.63	0.00
56	E11a_E12a	KnownJunction	0	0.70	0.00	1.45	1.14	58.90	1.66	19.96
57	ER12a	ExonRegion	0	3.84	0.85	0.52	0.70	47.41	1.09	13.10
58	E12a_E13a	KnownJunction	0	1.02	0.00	0.00	1.63	22.57	1.66	7.11
59	I12	Intron	0	11.25	1.08	1.01	0.00	1.93	0.73	0.80
60	I12_SR1	SilentIntronRegion	0	11.71	1.14	1.05	0.00	2.02	0.74	0.81
61	E13a_E14a	KnownJunction	0	0.00	0.00	1.55	0.00	50.81	1.50	10.92
62	ER13a	ExonRegion	0	1.02	0.00	0.63	1.25	37.46	2.45	10.79
63	I13	Intron	0	13.31	0.53	0.00	1.62	3.52	0.53	0.00
64	I13_SR1	SilentIntronRegion	0	13.54	0.53	0.00	1.65	3.58	0.54	0.00
65	E14_Aa	NovelBoundary	0	12.53	3.63	0.89	4.58	2.05	2.57	1.58
66	ER14a	ExonRegion	0	3.11	0.80	1.65	0.23	65.40	0.74	17.26
67	E14_Da	NovelBoundary	0	9.95	4.20	2.00	1.63	0.00	7.48	1.20
68	E14a_E15a	KnownJunction	0	1.00	1.58	1.29	1.14	89.31	0.00	21.65
69	E15_Aa	NovelBoundary	0	21.36	8.54	2.20	0.00	0.00	5.09	1.53
70	ER15a	ExonRegion	0	0.60	0.87	1.53	1.25	87.82	0.00	22.82
71	E15_Da	NovelBoundary	0	29.01	4.97	0.00	5.74	0.00	6.62	0.00
72	E15a_E16a	KnownJunction	0	0.00	1.23	1.74	0.00	80.73	0.00	23.32
73	E16_Aa	NovelBoundary	0	18.89	3.15	0.89	1.03	0.00	6.16	0.00
74	ER16a	ExonRegion	0	6.44	3.03	1.01	2.65	61.03	2.55	17.85
75	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	2.17	53.81	0.00	11.19
76	ER17a	ExonRegion	0	12.47	5.08	1.35	2.92	39.58	9.17	13.79
77	IG48	Intergenic	0	15.91	3.95	1.04	7.09	0.06	24.15	0.55
78	IG48_SR1	SilentIntergenicRegion	0	15.93	3.96	1.05	7.10	0.06	24.18	0.55