Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RGL3	Gene	0	11.30	12.88	4.74	7.75	58.00	1.99	0.25
2	393423	Transcript	0	4.86	4.68	0.00	4.88	0.00	0.00	0.87
3	380456	Transcript	0	0	0	0	0	0	0	0
4	342684	Transcript	0	4.74	6.16	1.10	2.42	1.88	0.00	0.00
5	ER1a	ExonRegion	0	0.00	0.00	0.00	2.22	16.04	0.39	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	12.84	1.55	0.00
7	ER2a	ExonRegion	0	0.04	4.48	0.75	2.40	5.41	0.59	0.00
8	E2a_E3a	KnownJunction	0	4.56	12.72	2.70	3.49	11.04	2.25	0.00
9	ER3a	ExonRegion	0	6.31	15.97	3.48	7.01	38.48	1.60	0.23
10	E3_Da	NovelBoundary	0	3.66	11.64	0.69	2.93	15.17	0.00	0.00
11	E3a_E4a	KnownJunction	0	5.37	2.52	2.05	1.68	13.56	0.00	0.00
12	I3	Intron	0	4.05	4.40	1.19	1.13	14.17	0.00	0.00
13	I3_AR1	ActiveIntronRegion	0	4.10	4.45	1.21	1.14	14.33	0.00	0.00
14	ER4a	ExonRegion	0	8.25	10.80	1.20	5.36	41.39	1.00	0.00
15	E4a_E5a	KnownJunction	0	6.51	13.85	1.19	6.75	47.28	1.66	0.00
16	ER5a	ExonRegion	0	10.11	12.76	5.33	5.16	51.12	1.21	0.00
17	ER5b	ExonRegion	0	9.31	13.99	4.72	2.63	62.33	0.45	0.00
18	E5b_E6a	KnownJunction	0	8.51	10.38	3.65	5.26	57.56	0.00	0.00
19	ER5c	ExonRegion	0	9.61	9.35	5.15	4.99	55.23	0.00	0.00
20	ER6a	ExonRegion	0	14.42	19.55	7.22	13.07	54.81	1.57	0.00
21	E6a_E7a	KnownJunction	0	16.31	22.57	9.13	14.87	73.08	4.88	0.54
22	ER7a	ExonRegion	0	17.38	19.14	6.72	11.46	65.91	2.32	0.15
23	E7_Da	NovelBoundary	0	17.59	11.93	2.76	15.52	53.81	2.22	0.87
24	E7a_E7b	KnownJunction	0	4.86	4.68	0.00	4.88	0.00	0.00	0.87
25	E7b_E8a	KnownJunction	0	11.63	15.76	6.42	16.85	78.52	2.81	0.57
26	ER7b	ExonRegion	0	13.70	12.76	3.05	15.38	46.16	2.45	0.67
27	ER7c	ExonRegion	0	13.51	14.73	4.35	16.78	66.95	1.99	0.93
28	ER8a	ExonRegion	0	15.75	18.48	9.56	9.39	82.43	2.24	0.47
29	E8a_E9a	KnownJunction	0	30.18	12.82	8.21	9.45	63.60	3.00	0.00
30	ER9a	ExonRegion	0	29.38	15.71	9.56	12.07	102.36	2.77	0.10
31	E9a_E10a	KnownJunction	0	18.68	21.91	12.96	13.55	123.91	4.48	0.62
32	ER10a	ExonRegion	0	20.55	21.68	12.94	10.57	148.93	6.15	1.05
33	E10a_E11a	KnownJunction	0	18.81	20.68	7.24	7.12	124.00	6.89	1.68
34	ER11a	ExonRegion	0	18.57	17.71	5.73	9.73	77.75	4.75	0.40
35	E11_Da	NovelBoundary	0	9.31	0.00	2.92	1.44	45.21	1.47	0.00
36	E11a_E12a	KnownJunction	0	13.75	13.21	1.49	7.26	35.92	3.32	0.00
37	I11	Intron	0	2.90	0.00	0.87	0.00	21.67	0.00	0.00
38	I11_AR1	ActiveIntronRegion	0	2.94	0.00	0.88	0.00	21.95	0.00	0.00
39	ER12a	ExonRegion	0	16.95	15.57	3.28	7.90	45.82	4.05	0.08
40	E12a_E13a	KnownJunction	0	15.04	10.88	3.84	8.29	50.35	2.81	0.00
41	ER13a	ExonRegion	0	20.28	17.08	4.44	10.01	80.94	3.42	0.93
42	E13a_E14a	KnownJunction	0	14.04	11.38	2.10	9.21	44.03	1.98	0.75
43	I13	Intron	0	1.36	1.22	1.53	0.75	20.01	0.12	0.00
44	I13_SR1	SilentIntronRegion	0	1.37	1.22	1.53	0.76	20.08	0.12	0.00
45	ER14a	ExonRegion	0	14.29	11.03	2.91	11.91	39.82	1.09	1.42
46	E14a_E15a	KnownJunction	0	18.06	10.72	7.54	8.45	42.74	1.47	0.00
47	ER15a	ExonRegion	0	17.70	9.95	4.20	9.98	55.00	0.00	0.19
48	E15a_E16a	KnownJunction	0	10.08	12.98	1.61	5.77	34.67	0.00	0.66
49	ER16a	ExonRegion	0	6.16	11.62	2.95	4.62	34.27	0.96	0.41
50	E16a_E17a	KnownJunction	0	12.20	9.85	3.71	3.17	42.19	0.00	0.00
51	ER17a	ExonRegion	0	8.23	11.94	4.55	5.59	49.24	0.34	0.00
52	E17a_E18a	KnownJunction	0	8.61	16.05	5.10	12.65	86.82	1.66	0.00
53	ER18a	ExonRegion	0	10.63	17.79	4.34	7.59	80.18	0.58	0.14
54	E18a_E19a	KnownJunction	0	8.40	13.21	4.20	8.99	50.79	1.39	0.79
55	E18a_E20a	KnownJunction	0	4.54	6.67	0.56	1.54	1.18	0.00	0.00
56	I18	Intron	0	4.52	1.31	1.04	0.67	28.83	0.08	0.00
57	I18_SR1	SilentIntronRegion	0	2.25	1.13	0.47	0.87	22.21	0.00	0.00
58	I18_AR1	ActiveIntronRegion	0	5.46	1.38	1.28	0.59	31.68	0.12	0.00
59	E19_Aa	NovelBoundary	0	4.14	0.00	1.39	1.33	22.20	0.00	0.00
60	ER19a	ExonRegion	0	8.89	8.65	4.77	7.39	78.80	3.77	0.19
61	ER20a	ExonRegion	0	4.94	5.65	1.64	3.29	2.59	0.00	0.00