Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FBXW9	Gene	0	11.83	23.17	8.56	26.51	32.07	11.40	31.79
2	393261	Transcript	0	0.96	0.20	1.04	1.04	2.36	0.41	0.51
3	254324	Transcript	0	0	0	0	0	0	0	0
4	380339	Transcript	0	1.62	2.71	0.57	2.95	1.22	0.63	1.86
5	ER1a	ExonRegion	0	1.15	0.00	0.51	0.00	0.81	0.00	0.67
6	ER1b	ExonRegion	0	5.55	14.31	4.35	20.66	17.23	9.96	13.77
7	E1a_E2a	KnownJunction	0	9.65	16.79	8.18	20.45	19.06	7.45	19.68
8	E1a_E3a	NovelJunction	0	1.79	4.36	6.24	16.66	0.00	2.92	0.00
9	I1	Intron	0	2.66	2.67	1.57	3.37	1.67	2.16	7.62
10	I1_SR1	SilentIntronRegion	0	2.67	2.67	1.57	3.38	1.67	2.16	7.63
11	ER2a	ExonRegion	0	11.30	23.85	6.18	18.60	26.84	5.88	23.88
12	E2a_E3a	KnownJunction	1	11.75	27.09	7.82	23.68	46.13	4.07	31.37
13	E3_Aa	NovelBoundary	0	6.21	1.47	2.07	0.00	1.06	0.00	10.59
14	ER3a	ExonRegion	0	15.43	30.83	9.44	36.95	51.80	9.20	40.81
15	E3a_E4a	KnownJunction	0	9.23	27.95	10.72	33.38	55.95	12.01	36.23
16	E3a_E6b	NovelJunction	0	0.72	0.00	2.04	8.80	0.00	2.65	0.89
17	ER4a	ExonRegion	0	13.84	23.88	8.40	29.75	44.15	6.03	38.50
18	E4a_E5a	KnownJunction	0	14.40	27.51	12.78	34.76	53.60	9.97	44.38
19	E5_Aa	NovelBoundary	0	3.20	8.72	0.53	1.41	5.51	2.63	9.52
20	ER5a	ExonRegion	0	17.10	37.21	16.18	30.35	66.91	10.37	58.13
21	E5a_E6a	KnownJunction	0	0.00	1.60	0.00	3.25	1.18	0.00	0.00
22	E5a_E6b	KnownJunction	0	21.13	34.36	17.37	27.82	77.48	9.54	52.83
23	ER6a	ExonRegion	0	3.23	3.82	1.14	2.64	1.26	1.27	3.72
24	E6_Ab	KnownBoundary	0	2.70	4.20	3.12	5.36	1.18	3.32	3.96
25	ER6b	ExonRegion	0	18.97	35.62	15.07	40.89	58.22	16.67	58.35
26	E6a_E7a	KnownJunction	0	17.59	31.32	19.21	32.86	68.24	19.24	68.07
27	ER7a	ExonRegion	0	14.99	35.58	12.30	36.68	53.54	17.63	57.85
28	E7a_E8a	KnownJunction	0	14.59	21.04	10.12	33.86	47.35	14.23	45.83
29	ER8a	ExonRegion	0	16.25	33.23	15.35	43.95	45.59	20.86	64.04
30	E8a_E9a	KnownJunction	0	14.79	42.24	16.64	51.69	59.22	24.23	75.96
31	ER9a	ExonRegion	0	13.59	33.81	15.72	43.53	46.22	24.13	57.26
32	E9a_E10a	KnownJunction	0	10.00	30.87	15.42	43.35	23.74	32.75	39.38
33	ER10a	ExonRegion	0	13.96	19.93	7.95	21.69	18.98	12.15	22.46
34	ER10b	ExonRegion	0	0.77	0.40	1.58	2.08	3.91	0.82	0.34
35	IG2_SR6	SilentIntergenicRegion	0	2.46	5.34	1.20	2.88	1.48	3.92	10.82
36	IG2_AR6	ActiveIntergenicRegion	0	3.58	2.98	1.90	4.97	1.32	2.08	10.20
37	IG2_AR5	ActiveIntergenicRegion	0	2.05	0.51	4.06	5.30	0.27	2.45	11.41
38	IG2_AR4	ActiveIntergenicRegion	0	2.90	2.83	3.31	4.99	0.81	2.45	11.47
39	IG2_SR1	SilentIntergenicRegion	0	11.23	3.41	2.63	8.39	1.59	7.36	0.00