Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DDX39	Gene	0	179.77	515.83	310.64	916.64	371.08	1150.77	108.84
2	242776	Transcript	0	141.12	410.62	258.57	803.45	314.98	952.80	82.47
3	324340	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	30.64	79.83	30.57	112.15	46.48	146.33	10.05
5	ER1b	ExonRegion	0	248.37	298.50	471.55	687.54	732.02	627.40	105.55
6	E1a_E2a	KnownJunction	0	309.21	382.04	621.43	965.96	410.36	865.42	147.74
7	I1_AR4	ActiveIntronRegion	1	73.59	56.91	13.23	24.91	5.09	77.34	5.06
8	E2_Aa	NovelBoundary	1	43.06	141.63	11.12	37.36	0.00	156.91	6.75
9	ER2a	ExonRegion	0	226.40	503.56	372.46	848.03	310.86	1074.75	101.38
10	E2_Da	NovelBoundary	1	54.78	186.05	41.56	108.17	4.50	255.67	5.32
11	E2a_E3a	KnownJunction	0	162.29	445.51	343.87	850.34	934.42	993.23	134.03
12	I2	Intron	0	29.61	106.35	13.06	69.92	1.36	164.28	3.36
13	I2_AR1	ActiveIntronRegion	0	29.78	106.90	13.14	70.30	1.37	165.15	3.38
14	E3_Aa	NovelBoundary	1	66.18	216.29	32.05	145.43	2.28	306.19	3.90
15	ER3a	ExonRegion	0	135.98	561.51	268.56	938.66	392.44	1255.85	106.34
16	E3a_E4a	KnownJunction	0	149.94	582.44	296.19	1085.78	274.91	1416.21	114.28
17	I3	Intron	1	40.21	58.72	7.78	20.08	0.67	56.32	2.57
18	I3_SR1	SilentIntronRegion	1	43.37	63.38	8.40	21.69	0.72	60.82	2.78
19	ER4a	ExonRegion	0	221.92	652.37	361.35	1113.12	430.85	1491.12	124.73
20	E4_Da	NovelBoundary	1	90.68	203.39	38.58	72.79	16.07	233.67	12.58
21	E4a_E5a	KnownJunction	0	176.66	505.51	349.92	1097.62	475.67	1308.47	103.90
22	I4	Intron	1	62.63	110.89	27.87	49.43	9.02	119.40	8.90
23	I4_AR1	ActiveIntronRegion	1	62.97	111.51	28.03	49.71	9.06	120.07	8.95
24	E5_Aa	NovelBoundary	1	85.85	146.78	47.03	92.52	6.85	182.35	13.14
25	ER5a	ExonRegion	0	220.84	629.57	363.06	1201.12	482.24	1491.54	147.11
26	E5a_E6a	KnownJunction	0	197.96	497.84	369.36	1247.25	557.07	1492.02	144.85
27	ER6a	ExonRegion	0	189.91	605.62	338.46	1183.72	527.22	1309.84	158.13
28	E6_Da	NovelBoundary	1	85.49	282.58	91.21	369.58	28.61	658.31	14.88
29	E6a_E7a	KnownJunction	0	124.12	383.98	294.42	783.12	585.17	725.39	151.57
30	I6	Intron	0	89.87	280.81	93.71	334.10	20.87	621.86	16.99
31	I6_AR1	ActiveIntronRegion	0	90.28	282.19	94.15	335.70	20.96	624.75	17.08
32	E7_Aa	NovelBoundary	1	99.27	333.73	93.11	532.94	16.64	777.09	20.31
33	ER7a	ExonRegion	0	199.46	620.87	382.26	1195.09	516.94	1294.16	149.63
34	E7_Da	NovelBoundary	0	113.44	309.48	180.19	509.61	166.21	680.77	51.32
35	E7a_E8a	KnownJunction	0	233.43	672.47	388.82	1215.09	509.31	1554.01	124.44
36	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER8a	ExonRegion	0	182.65	527.75	323.37	1020.76	367.50	1188.44	117.99
38	E8_Da	NovelBoundary	0	56.50	196.67	42.97	201.26	8.74	414.75	11.82
39	E8a_E9a	KnownJunction	0	117.75	362.44	291.52	865.80	336.62	922.42	77.42
40	E9_Aa	NovelBoundary	1	78.16	226.17	44.39	225.05	12.10	435.12	11.58
41	ER9a	ExonRegion	0	187.72	511.20	322.29	925.25	350.40	1201.38	96.57
42	E9a_E10a	KnownJunction	0	205.34	516.55	335.58	875.88	165.93	1310.99	98.08
43	ER10a	ExonRegion	0	140.89	541.32	233.88	775.69	173.05	1154.11	82.14
44	E10a_E11a	KnownJunction	0	106.30	385.30	192.92	530.20	190.37	874.42	63.34
45	ER11a	ExonRegion	0	68.40	216.61	103.18	304.43	126.07	548.43	33.97
46	IG9	Intergenic	0	5.32	16.31	1.02	4.62	0.00	8.21	0.51
47	IG9_AR2	ActiveIntergenicRegion	0	4.65	11.65	1.11	0.91	0.00	2.90	0.09
48	IG9_SR2	SilentIntergenicRegion	0	7.05	21.54	1.32	5.97	0.00	10.64	0.67
49	IG9_AR1	ActiveIntergenicRegion	0	2.38	13.48	0.41	5.99	0.00	8.83	0.67