Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TIMM44	Gene	0	65.78	246.24	116.35	285.16	171.82	221.81	115.76
2	270538	Transcript	0	71.96	274.85	131.29	309.49	199.54	235.54	131.60
3	IG32_AR2	ActiveIntergenicRegion	0	3.65	14.44	5.17	14.29	4.05	14.81	1.12
4	ER1a	ExonRegion	0	10.20	57.43	11.69	60.78	14.87	47.79	3.16
5	E1a_E2a	KnownJunction	1	24.53	127.57	43.70	155.91	51.57	110.52	15.66
6	ER2a	ExonRegion	0	21.71	127.28	46.32	133.80	53.37	123.74	29.57
7	E2a_E3a	KnownJunction	0	28.94	165.04	47.52	176.15	52.77	136.49	43.38
8	ER3a	ExonRegion	0	94.63	276.42	179.20	349.97	187.34	322.77	136.82
9	E3a_E4a	KnownJunction	0	86.25	342.24	149.09	373.64	182.00	311.33	146.90
10	E3a_E5a	NovelJunction	1	0.65	21.44	0.00	31.13	0.00	43.15	0.00
11	ER4a	ExonRegion	0	86.11	306.76	143.09	344.85	150.07	286.23	130.84
12	E4a_E5a	KnownJunction	0	85.94	316.81	145.95	276.11	131.82	265.77	102.00
13	ER5a	ExonRegion	0	80.00	269.87	131.75	310.44	166.54	277.31	109.48
14	E5a_E6a	KnownJunction	0	96.52	235.29	142.05	304.21	236.11	246.26	114.67
15	ER6a	ExonRegion	0	80.15	237.57	144.75	296.38	204.61	237.90	113.11
16	E6_Da	NovelBoundary	1	18.28	34.63	27.78	27.36	5.56	22.86	5.43
17	E6a_E7a	KnownJunction	0	63.44	294.24	128.76	303.12	205.72	206.71	116.94
18	Ix_SR2	SilentIntronRegion	0	14.08	31.39	26.49	32.59	6.29	20.15	5.75
19	ER7a	ExonRegion	0	84.32	328.56	167.60	375.90	234.01	259.93	157.17
20	E7a_E8a	KnownJunction	0	98.94	395.65	207.15	455.51	244.48	336.20	181.98
21	ER8a	ExonRegion	0	92.68	375.82	190.21	408.88	253.46	266.92	162.10
22	E8a_E9a	KnownJunction	0	89.34	292.74	189.29	383.10	275.09	224.15	161.84
23	E8a_E10a	NovelJunction	1	2.64	1.58	0.89	18.91	0.00	12.97	0.87
24	ER9a	ExonRegion	0	96.09	337.05	184.77	394.66	285.22	291.97	184.74
25	E9a_E10a	KnownJunction	0	65.49	276.77	149.34	326.34	287.26	265.45	161.36
26	Ix	Intron	0	15.93	39.17	14.19	26.90	7.44	14.47	7.34
27	Ix_SR1	SilentIntronRegion	0	17.97	43.65	14.74	30.41	7.89	17.51	7.80
28	E10_Aa	NovelBoundary	0	18.06	34.15	17.91	21.46	0.97	19.35	8.04
29	ER10a	ExonRegion	0	84.18	314.36	164.01	341.69	282.50	268.11	191.89
30	E10a_E11a	KnownJunction	0	89.41	285.36	136.37	302.96	292.59	231.20	173.90
31	E10a_E12a	NovelJunction	1	1.02	14.40	1.49	35.49	1.06	22.43	0.00
32	E10a_E13a	NovelJunction	1	0.00	1.16	1.52	14.28	0.00	2.79	0.67
33	Ix_AR1	ActiveIntronRegion	0	17.22	28.27	9.99	15.71	13.59	11.63	8.50
34	ER11a	ExonRegion	0	83.19	358.72	159.19	405.47	307.37	300.79	217.74
35	E11a_E12a	KnownJunction	0	60.52	343.97	128.64	357.39	264.35	266.04	187.66
36	ER12a	ExonRegion	0	81.72	326.63	124.49	365.24	292.36	245.20	180.96
37	E12a_E13a	KnownJunction	0	76.09	309.45	109.89	337.72	236.59	212.23	195.87
38	ER13a	ExonRegion	0	38.51	169.53	57.54	197.07	96.52	147.37	70.30