Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CCDC57	Gene	0	42.20	24.21	35.06	20.19	9.60	10.08	18.29
2	392343	Transcript	0	3.33	6.26	3.08	3.17	0.13	1.16	1.14
3	389641	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	392347	Transcript	0	13.06	5.77	9.57	6.70	1.92	3.68	5.99
5	327026	Transcript	0	28.29	9.07	24.65	9.17	3.55	3.92	10.55
6	392346	Transcript	0	17.85	15.29	13.81	10.11	3.65	3.93	6.91
7	324808	Transcript	0	0	0	0	0	0	0	0
8	392345	Transcript	0	17.29	9.84	13.86	9.39	4.20	5.65	9.45
9	ER1a	ExonRegion	0	10.68	12.02	4.69	3.61	0.81	3.42	6.86
10	ER2a	ExonRegion	0	5.64	9.49	4.79	6.34	0.26	2.32	2.28
11	E2a_E3a	KnownJunction	0	1.02	3.02	1.37	0.00	0.00	0.00	0.00
12	ER3a	ExonRegion	0	29.77	34.10	22.54	23.13	5.34	18.11	14.49
13	E3a_E4a	KnownJunction	0	84.32	44.69	46.17	33.05	16.67	15.44	25.32
14	ER4a	ExonRegion	0	54.54	36.04	48.47	36.60	7.27	14.48	29.42
15	E4a_E5a	KnownJunction	0	47.17	30.53	40.81	24.92	4.10	15.65	29.91
16	ER5a	ExonRegion	0	78.54	35.31	57.64	26.79	10.15	16.56	26.14
17	E5a_E6a	KnownJunction	0	54.58	40.48	61.16	31.15	5.26	12.25	21.58
18	ER6a	ExonRegion	0	38.32	28.38	37.75	22.22	4.45	10.23	14.37
19	E6_Da	NovelBoundary	0	28.71	12.45	33.34	7.80	5.21	6.30	15.11
20	E6a_E7a	KnownJunction	0	10.05	13.06	13.84	14.25	0.00	4.72	3.63
21	I6	Intron	0	24.40	10.93	25.00	8.77	3.27	3.65	10.11
22	I6_SR1	SilentIntronRegion	0	24.69	11.05	25.32	8.88	3.30	3.69	10.23
23	E7_Aa	NovelBoundary	0	36.43	13.95	38.01	24.84	3.43	10.10	16.81
24	ER7a	ExonRegion	0	32.02	18.06	42.58	26.72	7.64	12.26	17.22
25	E7a_E8a	KnownJunction	0	38.19	35.65	58.53	38.58	10.63	20.34	23.66
26	ER8a	ExonRegion	0	47.59	42.75	46.64	40.59	9.84	25.68	22.03
27	E8_Da	NovelBoundary	0	25.37	4.57	25.48	0.00	5.21	1.18	13.70
28	E8a_E10a	KnownJunction	0	25.72	52.20	26.86	49.36	7.22	19.72	17.15
29	I8	Intron	1	18.09	0.18	17.81	0.37	1.72	0.09	2.03
30	I8_SR1	SilentIntronRegion	0	18.12	0.18	17.84	0.38	1.72	0.09	2.04
31	E9_Aa	NovelBoundary	0	24.08	5.86	25.45	0.00	3.04	0.00	7.98
32	ER9a	ExonRegion	1	23.74	1.68	28.14	2.96	1.73	1.80	4.31
33	E9a_E10a	KnownJunction	1	28.29	0.00	30.39	8.05	0.00	3.11	5.13
34	ER10a	ExonRegion	0	78.39	53.46	79.88	52.75	14.17	32.25	40.71
35	E10a_E11a	KnownJunction	0	65.81	31.18	71.26	38.52	9.73	14.20	29.34
36	E10a_E12a	KnownJunction	0	8.13	10.04	3.62	8.05	1.98	3.43	12.54
37	ER11a	ExonRegion	0	68.14	36.84	70.65	47.00	8.68	19.05	29.45
38	E11a_E12a	KnownJunction	0	95.60	39.64	88.12	56.51	6.18	27.74	32.32
39	ER12a	ExonRegion	0	79.88	38.47	77.11	50.96	10.88	18.36	44.17
40	E12a_E13a	KnownJunction	0	77.98	30.74	86.67	34.19	3.00	23.16	45.67
41	E13_Aa	NovelBoundary	1	35.27	0.00	37.35	1.27	0.00	1.45	0.00
42	ER13a	ExonRegion	0	74.78	46.98	88.99	44.23	10.60	27.95	38.41
43	E13a_E14a	KnownJunction	0	52.64	48.37	82.93	50.42	5.23	25.97	37.22
44	ER14a	ExonRegion	0	80.29	51.59	100.89	51.24	8.50	24.25	36.72
45	E14a_E15a	KnownJunction	0	40.04	39.20	40.29	39.28	4.13	17.69	24.01
46	E15_Aa	NovelBoundary	0	9.80	3.91	17.60	0.00	0.00	3.30	4.87
47	ER15a	ExonRegion	0	72.99	37.80	79.91	45.75	10.40	21.76	35.55
48	E15a_E16a	KnownJunction	0	43.16	34.65	54.12	45.24	3.67	18.57	25.35
49	ER16a	ExonRegion	0	59.25	35.74	61.59	37.45	7.87	19.16	26.94
50	E16_Da	KnownBoundary	1	21.08	25.14	19.33	13.46	5.39	3.78	14.36
51	E16a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E16a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER16b	ExonRegion	0	27.72	21.47	19.52	18.81	5.98	7.11	14.89
54	E16_Db	KnownBoundary	0	34.83	22.99	22.71	15.09	7.19	5.74	15.75
55	ER16c	ExonRegion	0	53.02	24.58	36.43	17.61	10.50	7.34	20.20
56	E16_Dc	NovelBoundary	0	70.85	15.53	52.05	21.51	9.71	6.99	19.25
57	I16	Intron	0	28.80	13.88	24.37	12.03	7.12	4.90	12.34
58	I16_AR1	ActiveIntronRegion	0	31.39	12.57	28.57	6.83	8.63	2.84	11.76
59	I16_SR1	SilentIntronRegion	0	53.25	20.01	50.97	17.94	9.48	4.53	17.62
60	I16_AR2	ActiveIntronRegion	0	46.81	21.13	45.08	16.35	10.19	5.70	20.65
61	I16_SR2	SilentIntronRegion	1	21.49	12.60	17.19	14.45	7.70	5.87	16.00
62	I16_AR3	ActiveIntronRegion	0	24.60	12.89	17.66	12.36	6.83	5.45	9.46
63	I16_SR3	SilentIntronRegion	0	15.72	8.41	11.15	6.31	3.28	3.60	5.34
64	E17_Aa	NovelBoundary	0	26.47	19.44	29.63	17.80	14.13	5.65	8.43
65	ER17a	ExonRegion	0	31.09	29.17	27.17	20.23	5.68	7.85	13.82
66	E17_Ab	KnownBoundary	0	45.71	45.45	40.62	41.50	8.25	20.45	23.25
67	ER17b	ExonRegion	0	38.74	38.10	40.31	32.47	8.39	16.56	24.32
68	E17a_E19a	KnownJunction	0	41.59	35.31	44.03	24.79	9.01	11.42	30.63
69	E17a_E20b	NovelJunction	1	3.57	2.34	11.02	10.51	0.00	3.06	0.76
70	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	E19_Aa	NovelBoundary	1	4.19	3.15	3.03	4.01	4.29	3.51	10.59
72	ER19a	ExonRegion	0	84.38	38.11	61.55	39.36	12.23	22.29	41.97
73	E19a_E20b	KnownJunction	0	89.47	55.14	67.91	38.04	9.61	30.04	35.90
74	ER20a	ExonRegion	0	26.13	11.54	19.14	13.40	3.85	7.36	11.97
75	ER20b	ExonRegion	0	80.47	46.35	66.62	46.23	14.66	31.56	43.48
76	E20a_E22b	KnownJunction	0	73.94	49.97	59.09	46.95	11.50	24.76	44.31
77	ER21a	ExonRegion	0	0.16	0.09	0.00	0.00	0.00	0.00	0.00
78	ER22a	ExonRegion	0	48.03	27.33	37.26	26.19	8.91	15.32	27.66
79	ER22b	ExonRegion	0	71.09	40.60	62.07	42.99	15.09	29.83	40.00
80	E22_Da	KnownBoundary	0	1.49	1.58	4.86	1.30	9.91	1.66	1.36
81	E22a_E23a	KnownJunction	0	8.91	1.37	4.81	2.87	0.88	0.00	2.18
82	E22a_E24a	KnownJunction	0	35.23	31.63	53.10	41.21	0.99	18.47	27.87
83	ER22c	ExonRegion	0	3.69	2.11	4.34	1.98	3.69	1.64	0.69
84	E22_Db	NovelBoundary	0	3.45	0.97	6.52	1.03	8.62	3.11	3.65
85	E23_Aa	NovelBoundary	0	13.27	5.41	9.04	0.00	3.09	0.00	2.82
86	ER23a	ExonRegion	0	13.01	5.42	10.84	3.28	13.62	1.46	4.51
87	ER23b	ExonRegion	0	4.61	1.42	0.45	0.00	1.62	0.00	0.00
88	I23_AR2	ActiveIntronRegion	1	7.25	12.78	5.43	2.89	7.18	0.00	11.59
89	ER24a	ExonRegion	0	22.82	36.72	26.08	26.55	5.79	14.40	19.37