Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ASPSCR1	Gene	0	22.64	27.37	29.12	18.88	46.09	21.42	22.76
2	306739	Transcript	0	26.90	22.83	23.60	15.65	46.61	22.44	17.56
3	344865	Transcript	0	1.28	0.40	1.53	0.83	1.58	0.42	0.92
4	306729	Transcript	0	1.57	2.39	1.31	1.12	2.08	0.99	1.14
5	ER1a	ExonRegion	0	0.76	0.77	1.96	1.86	4.72	1.25	0.69
6	E1_Ab	KnownBoundary	0	14.65	2.81	17.27	9.54	5.16	7.16	6.41
7	ER1b	ExonRegion	0	5.17	22.39	6.18	19.77	19.87	17.26	8.04
8	E1a_E2a	KnownJunction	0	6.04	16.71	14.08	5.26	5.30	7.10	7.41
9	I1_AR2	ActiveIntronRegion	0	1.65	0.32	2.08	1.69	9.58	0.40	0.62
10	I1_SR2	SilentIntronRegion	0	1.16	0.73	1.90	0.90	11.36	0.00	2.21
11	ER2a	ExonRegion	0	15.57	29.61	28.22	15.12	26.38	18.50	18.13
12	E2a_E3a	KnownJunction	0	36.47	43.06	55.25	26.14	43.57	39.82	34.17
13	ER3a	ExonRegion	0	47.64	53.09	61.97	33.57	89.95	39.49	46.52
14	E3a_E4a	KnownJunction	0	37.89	57.72	69.28	44.32	162.02	39.69	37.48
15	ER4a	ExonRegion	0	34.53	59.50	54.77	35.96	90.98	35.60	35.33
16	E4a_E5a	KnownJunction	0	31.59	48.65	43.01	27.01	66.83	36.90	26.99
17	E4a_E8a	NovelJunction	1	3.45	20.41	6.61	3.12	2.81	15.57	0.70
18	ER5a	ExonRegion	0	22.88	35.82	35.42	26.29	51.09	24.69	25.83
19	E5a_E6a	KnownJunction	0	24.17	22.57	33.58	20.54	49.68	19.35	31.86
20	ER6a	ExonRegion	0	27.77	31.87	34.89	15.44	54.08	18.01	32.43
21	E6a_E7a	KnownJunction	0	25.60	37.25	41.59	13.98	69.20	19.32	30.45
22	E7_Aa	NovelBoundary	1	10.21	1.05	14.59	0.00	0.00	0.00	0.00
23	ER7a	ExonRegion	0	14.82	23.53	24.65	14.93	35.15	15.01	19.52
24	E7a_E8a	KnownJunction	1	10.06	12.08	12.17	6.80	27.46	21.04	14.49
25	ER8a	ExonRegion	0	17.37	28.79	26.58	22.25	52.06	22.87	22.00
26	E8a_E9a	KnownJunction	0	55.36	33.36	64.82	32.35	111.14	45.69	39.18
27	ER9a	ExonRegion	0	64.96	42.25	67.95	37.83	100.30	48.80	48.56
28	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E9a_E11a	KnownJunction	0	58.55	42.24	59.00	40.26	101.57	35.70	59.25
30	E10_Aa	NovelBoundary	1	64.24	30.50	23.57	17.18	23.51	24.15	19.22
31	ER10a	ExonRegion	0	2.55	0.80	3.06	1.66	3.16	0.84	1.84
32	E10_Da	NovelBoundary	1	20.48	16.63	17.00	10.54	14.25	6.16	5.95
33	ER11a	ExonRegion	0	47.82	42.45	58.33	35.05	93.45	40.48	51.92
34	E11a_E12a	KnownJunction	0	49.44	45.45	57.96	31.70	89.12	46.23	44.38
35	ER12a	ExonRegion	0	91.64	57.19	98.61	52.02	154.90	59.59	65.51
36	E12a_E13a	KnownJunction	0	116.60	61.48	116.56	62.36	188.94	64.27	86.71
37	ER13a	ExonRegion	0	94.78	62.21	89.48	47.71	125.91	61.53	66.98
38	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E13a_E15a	KnownJunction	0	53.04	44.90	45.24	29.45	88.50	43.63	34.42
40	E14_Aa	NovelBoundary	0	4.44	10.56	3.66	2.79	8.81	2.71	3.21
41	ER14a	ExonRegion	0	3.04	7.18	3.92	3.35	6.23	2.96	3.41
42	E14a_E15a	KnownJunction	0	1.67	0.00	0.00	0.00	0.00	0.00	0.00
43	ER15a	ExonRegion	0	38.33	42.59	39.07	27.98	58.37	37.86	35.53
44	E15a_E16a	KnownJunction	0	27.42	32.66	32.33	23.46	74.18	28.30	35.13
45	E16_Aa	NovelBoundary	0	10.00	3.18	15.99	4.47	4.31	1.10	7.32
46	ER16a	ExonRegion	0	30.97	35.60	33.99	24.39	73.99	27.95	38.41
47	E16_Da	NovelBoundary	0	1.77	2.71	1.91	1.68	3.99	8.23	2.58
48	E16a_E17a	KnownJunction	0	41.96	40.20	50.51	27.71	68.74	37.95	41.22
49	ER17a	ExonRegion	0	17.34	29.47	23.97	18.52	36.72	29.69	18.83
50	E17a_E18a	KnownJunction	0	5.24	19.62	9.31	10.59	19.80	10.16	12.63
51	ER18a	ExonRegion	0	1.02	9.49	2.74	3.97	18.95	3.55	2.97