Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CCDC45	Gene	0	129.10	163.89	112.56	164.64	128.32	200.56	68.14
2	397727	Transcript	0	37.51	42.42	31.33	41.12	29.60	43.47	15.24
3	269064	Transcript	0	108.26	106.88	102.22	118.29	106.43	121.70	53.99
4	ER1a	ExonRegion	0	0.05	0.16	0.05	0.08	0.05	0.00	0.00
5	ER2a	ExonRegion	0	99.40	153.94	94.13	140.76	71.23	165.63	39.96
6	E2a_E3a	KnownJunction	0	125.88	188.71	125.63	181.05	123.10	186.04	55.19
7	E2a_E4b	NovelJunction	1	0.00	0.00	0.76	1.68	0.00	10.21	0.00
8	E3_Aa	NovelBoundary	1	50.85	6.07	53.70	1.49	2.26	1.61	2.29
9	ER3a	ExonRegion	0	132.80	199.17	146.33	185.64	131.62	208.48	65.02
10	E3a_E4a	KnownJunction	0	2.72	1.44	0.00	0.00	1.18	0.00	0.00
11	E3a_E4b	KnownJunction	0	150.49	165.80	147.48	153.80	107.50	170.77	58.89
12	ER4a	ExonRegion	0	9.72	8.81	7.89	8.11	6.56	9.01	3.24
13	E4_Da	NovelBoundary	0	151.21	154.29	149.68	138.33	131.40	146.41	50.78
14	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER4b	ExonRegion	0	164.12	173.03	163.02	159.20	129.58	176.49	63.89
16	ER4c	ExonRegion	0	145.10	145.97	154.28	138.33	134.92	139.72	67.32
17	E4_Db	NovelBoundary	1	37.69	4.49	17.50	9.27	10.83	6.19	2.42
18	E4b_E5a	KnownJunction	0	85.04	71.06	94.80	71.55	80.59	42.91	54.89
19	E4b_E6a	NovelJunction	0	45.70	90.79	62.22	67.81	49.47	79.46	23.30
20	E4b_E7a	NovelJunction	1	0.72	6.86	1.78	3.31	1.04	18.44	0.00
21	I4	Intron	0	31.00	12.27	16.55	13.03	16.18	6.44	6.51
22	I4_AR1	ActiveIntronRegion	0	31.98	7.54	18.25	10.01	12.78	3.96	6.37
23	I4_SR1	SilentIntronRegion	0	33.30	10.29	18.11	9.39	12.80	4.17	4.50
24	I4_AR2	ActiveIntronRegion	0	31.62	9.77	14.25	8.34	11.84	2.07	5.97
25	I4_AR3	ActiveIntronRegion	0	28.52	19.38	14.90	17.74	17.32	8.71	5.36
26	I4_SR3	SilentIntronRegion	0	31.83	13.62	19.00	17.37	22.49	11.55	7.97
27	E5_Aa	NovelBoundary	1	51.57	14.27	30.75	16.63	37.39	5.49	3.96
28	ER5a	ExonRegion	0	120.06	69.25	102.36	78.22	118.77	62.68	53.30
29	E5_Da	NovelBoundary	1	66.73	31.05	46.11	27.71	52.40	13.11	5.10
30	E5a_E6a	KnownJunction	0	67.36	43.93	71.05	80.27	94.06	42.99	36.62
31	I5	Intron	0	49.70	20.60	25.72	16.34	30.62	17.78	13.16
32	I5_SR1	SilentIntronRegion	0	39.37	19.54	26.16	14.58	28.79	9.89	7.11
33	I5_AR2	ActiveIntronRegion	0	54.83	21.22	25.67	17.27	31.66	21.56	16.06
34	E6_Ab	NovelBoundary	0	114.38	105.40	73.10	116.41	83.52	85.57	47.28
35	ER6a	ExonRegion	0	102.20	78.78	81.56	103.50	98.07	75.58	48.67
36	ER6b	ExonRegion	0	180.74	193.38	150.15	168.13	197.01	174.39	80.89
37	E6a_E7a	KnownJunction	0	193.90	221.34	207.32	202.80	188.27	183.85	105.45
38	ER7a	ExonRegion	0	136.10	217.47	134.45	207.58	150.99	214.81	94.05
39	E7a_E8a	KnownJunction	0	79.36	169.58	83.92	146.86	99.66	146.97	50.95
40	ER8a	ExonRegion	0	107.43	152.02	105.96	170.17	132.54	185.23	78.19
41	E8a_E9a	KnownJunction	0	95.15	111.73	75.17	118.77	100.83	127.94	51.65
42	ER9a	ExonRegion	0	94.36	140.03	85.48	130.90	79.37	140.66	55.10
43	E9_Da	NovelBoundary	1	36.82	24.38	30.51	22.03	12.93	12.65	2.19
44	E9a_E10a	KnownJunction	0	80.91	145.10	90.17	117.74	99.47	141.53	70.30
45	I9	Intron	1	48.46	18.54	21.02	16.58	9.20	8.91	3.81
46	I9_SR1	SilentIntronRegion	1	49.15	18.79	21.32	16.81	9.34	9.06	3.87
47	E10_Aa	NovelBoundary	1	73.17	35.02	37.81	27.01	26.30	16.40	5.80
48	ER10a	ExonRegion	0	129.07	162.30	110.10	146.12	120.86	160.67	62.49
49	E10a_E11a	KnownJunction	0	149.16	163.72	134.74	138.76	104.11	182.61	64.49
50	E10a_E12a	NovelJunction	0	5.01	13.21	2.23	11.05	0.00	9.94	3.10
51	I10_AR1	ActiveIntronRegion	0	31.65	9.69	16.95	9.91	21.37	5.52	7.57
52	ER11a	ExonRegion	0	176.49	191.17	136.47	181.34	149.24	207.73	72.99
53	E11a_E12a	KnownJunction	0	142.50	195.75	129.48	201.64	131.86	219.03	59.99
54	ER12a	ExonRegion	0	177.22	195.44	147.78	211.29	153.81	220.09	78.05
55	E12a_E13a	KnownJunction	0	120.33	149.85	129.55	188.72	120.22	223.11	63.20
56	E12a_E14a	NovelJunction	0	5.22	2.86	3.41	2.95	3.20	11.34	0.70
57	ER13a	ExonRegion	0	121.97	174.10	122.48	189.43	132.79	201.81	71.01
58	E13a_E14a	KnownJunction	0	87.89	90.35	76.77	137.87	101.29	114.57	53.01
59	E13b_E14a	KnownJunction	0	27.66	34.57	15.33	34.49	17.87	44.03	7.77
60	ER13b	ExonRegion	0	33.04	44.95	25.23	43.02	15.39	43.22	12.14
61	I13	Intron	0	28.73	15.95	14.68	8.13	16.84	7.62	6.49
62	I13_AR1	ActiveIntronRegion	0	28.80	15.99	14.71	8.15	16.87	7.63	6.51
63	E14a_E14b	KnownJunction	0	89.54	86.01	86.90	85.42	87.92	94.87	43.90
64	E14_Ab	NovelBoundary	0	151.69	169.61	142.07	178.42	169.72	219.41	75.11
65	ER14a	ExonRegion	0	148.88	170.56	139.39	203.15	144.51	202.66	82.56
66	ER14b	ExonRegion	0	162.14	175.75	147.44	187.04	168.72	237.84	79.15
67	ER14c	ExonRegion	0	181.16	194.45	165.12	192.67	159.84	271.68	79.54
68	E14_Db	KnownBoundary	0	70.23	63.66	52.72	63.53	54.24	94.25	25.15
69	E14b_E14c	KnownJunction	0	99.86	121.16	83.95	116.84	78.29	113.18	39.61
70	E14_Ac	KnownBoundary	0	29.87	55.98	43.94	60.98	61.85	67.83	19.62
71	ER14d	ExonRegion	0	133.96	163.20	123.28	164.60	122.83	215.37	68.81
72	ER14e	ExonRegion	0	113.71	155.00	104.11	160.13	117.95	220.48	73.55
73	E14_Dc	NovelBoundary	0	35.65	28.61	28.57	30.10	28.33	26.00	7.44
74	E14c_E15a	KnownJunction	0	87.69	134.77	78.92	147.10	98.87	236.78	73.23
75	I14	Intron	0	63.89	51.16	30.30	47.76	47.52	51.27	15.52
76	I14_AR1	ActiveIntronRegion	0	26.91	21.02	14.92	14.49	24.06	20.40	8.45
77	I14_AR2	ActiveIntronRegion	0	40.33	20.86	23.59	19.29	45.68	23.33	6.11
78	I14_SR1	SilentIntronRegion	0	71.82	50.46	39.06	49.55	65.76	44.87	17.81
79	I14_AR3	ActiveIntronRegion	0	79.31	61.10	34.51	57.05	53.58	61.29	18.54
80	I14_SR2	SilentIntronRegion	0	83.51	68.78	38.76	63.11	52.25	83.96	22.57
81	I14_AR4	ActiveIntronRegion	0	51.63	55.87	29.38	56.06	44.03	53.04	14.51
82	E15_Aa	NovelBoundary	0	62.85	65.42	33.09	70.08	53.85	51.86	17.70
83	ER15a	ExonRegion	0	132.24	181.14	118.62	195.65	156.51	247.48	77.28
84	E15a_E16a	KnownJunction	0	127.16	167.90	115.88	184.65	145.60	236.62	75.83
85	ER16a	ExonRegion	0	131.42	191.96	110.35	201.68	145.63	278.25	85.70
86	E16a_E17a	KnownJunction	0	126.49	210.04	113.25	197.93	161.12	317.15	78.35
87	ER17a	ExonRegion	0	160.55	211.97	131.62	198.63	145.75	294.60	87.67
88	E17_Da	NovelBoundary	0	41.57	28.19	27.89	42.78	23.21	22.22	8.40
89	E17a_E18a	KnownJunction	0	120.23	140.47	106.41	122.91	128.38	261.97	74.22
90	ER18a	ExonRegion	0	157.18	185.05	114.76	172.79	168.00	257.08	84.69
91	E18a_E19a	KnownJunction	0	147.24	180.46	101.17	201.07	130.02	250.55	63.52
92	ER19a	ExonRegion	0	134.57	181.89	105.95	213.99	144.36	280.48	76.73
93	E19a_E20a	KnownJunction	0	113.52	155.82	106.70	189.07	127.25	276.47	76.34
94	ER20a	ExonRegion	0	125.36	164.71	87.35	181.26	122.04	268.31	67.27
95	E20_Da	KnownBoundary	0	71.88	115.36	55.35	115.76	80.32	178.65	42.82
96	ER20b	ExonRegion	0	28.39	64.74	23.19	67.70	37.57	114.55	19.23
97	IG22	Intergenic	0	25.78	11.96	19.41	14.41	17.86	11.86	13.68
98	IG22_AR3	ActiveIntergenicRegion	0	53.12	23.11	40.80	27.95	39.26	22.50	26.11