Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MIF4GD	Gene	0	39.51	33.52	22.34	17.20	85.85	20.08	101.70
2	245551	Transcript	0	30.02	26.42	17.26	15.07	68.63	14.92	84.32
3	325102	Transcript	0	18.65	20.11	11.12	9.42	11.32	12.31	56.64
4	ER1a	ExonRegion	0	0.77	1.19	0.65	0.00	1.18	0.78	1.81
5	E1a_E2a	KnownJunction	0	4.72	1.10	1.77	1.19	25.68	5.84	11.16
6	ER1b	ExonRegion	0	3.15	1.80	1.40	0.56	15.75	4.23	7.21
7	I1	Intron	0	2.66	8.42	2.07	4.22	4.44	5.59	3.35
8	I1_AR1	ActiveIntronRegion	0	2.66	8.43	2.07	4.23	4.45	5.60	3.35
9	E2_Aa	NovelBoundary	0	5.27	14.84	2.93	8.56	6.36	17.37	6.29
10	ER2a	ExonRegion	0	14.25	15.97	9.25	4.94	36.03	13.37	33.95
11	E2_Da	NovelBoundary	0	2.65	13.29	1.35	6.39	0.88	10.88	0.53
12	E2a_E3a	KnownJunction	0	0.83	3.05	0.00	0.00	2.28	3.32	1.55
13	E2a_E4a	KnownJunction	1	12.78	15.00	6.91	0.00	33.70	10.72	33.44
14	E3_Aa	NovelBoundary	0	9.53	8.33	4.84	4.17	5.81	2.14	27.03
15	ER3a	ExonRegion	0	6.74	7.66	4.21	3.23	17.42	5.65	22.21
16	E3a_E4a	KnownJunction	0	9.95	4.65	7.73	1.68	21.95	1.39	29.68
17	I3_AR1	ActiveIntronRegion	0	5.70	12.35	4.71	7.32	2.87	11.05	3.61
18	E4_Aa	NovelBoundary	0	5.42	28.53	5.66	8.67	7.15	8.58	7.11
19	ER4a	ExonRegion	0	29.61	34.36	25.31	13.34	89.87	26.04	120.56
20	E4_Da	NovelBoundary	0	9.08	20.31	9.87	16.07	10.58	4.37	10.48
21	E4a_E5a	KnownJunction	1	40.21	27.35	14.01	3.09	114.00	11.26	132.87
22	I4	Intron	0	3.01	10.16	5.01	8.38	6.10	8.13	5.08
23	I4_AR1	ActiveIntronRegion	0	3.05	10.26	5.06	8.48	6.17	8.21	5.13
24	E5_Aa	NovelBoundary	0	2.89	16.71	7.72	17.37	7.77	7.32	9.40
25	ER5a	ExonRegion	0	38.91	41.58	22.83	16.13	100.93	22.06	135.86
26	E5_Da	NovelBoundary	0	21.45	14.29	14.03	5.20	4.20	10.53	9.62
27	E5a_E6a	KnownJunction	0	51.07	41.72	21.02	13.38	95.05	17.37	170.82
28	E6_Aa	NovelBoundary	0	4.16	8.46	4.15	10.62	4.08	5.57	10.86
29	ER6a	ExonRegion	0	42.36	44.52	19.04	18.35	97.41	18.15	146.43
30	E6_Da	KnownBoundary	1	14.99	18.13	8.38	9.86	27.57	5.71	70.12
31	E6a_E6b	KnownJunction	0	17.66	29.95	9.15	14.01	34.60	15.46	73.55
32	E6_Ab	KnownBoundary	1	13.77	9.48	2.11	7.80	17.45	2.76	30.74
33	ER6b	ExonRegion	0	36.88	39.69	15.35	19.95	67.49	17.57	114.01
34	ER6c	ExonRegion	0	35.14	33.98	14.57	18.97	99.34	16.46	101.11
35	E6b_E7a	KnownJunction	0	25.35	17.86	10.42	10.76	138.89	6.08	66.97
36	I6	Intron	0	2.72	8.06	5.85	7.58	7.01	6.23	7.64
37	I6_SR1	SilentIntronRegion	0	3.04	8.51	6.57	8.69	6.52	6.28	7.89
38	E7_Aa	NovelBoundary	0	3.89	11.85	3.19	9.21	11.20	6.27	7.15
39	E7a_E7b	KnownJunction	0	11.73	6.80	2.59	5.99	10.95	4.34	22.53
40	E7_Ab	NovelBoundary	0	13.67	14.06	10.30	6.94	56.55	6.91	36.17
41	ER7a	ExonRegion	0	39.12	27.39	15.58	17.23	121.92	13.82	98.80
42	ER7b	ExonRegion	0	40.73	26.73	16.93	17.46	127.96	13.49	108.83
43	ER7c	ExonRegion	0	47.71	34.95	23.57	20.59	113.33	23.54	129.77
44	E7_Db	KnownBoundary	0	18.93	9.48	9.00	3.03	45.41	9.25	52.11
45	E7b_E7c	KnownJunction	0	30.73	19.70	18.29	11.19	0.00	19.11	74.62
46	E7_Ac	KnownBoundary	0	29.12	29.50	16.86	15.85	75.59	17.61	84.33
47	ER7d	ExonRegion	0	57.25	43.13	30.82	23.90	119.99	30.04	163.14
48	ER7e	ExonRegion	0	47.33	46.51	37.94	26.52	123.90	26.36	173.22
49	E7_Dc	KnownBoundary	1	24.52	27.64	24.65	16.44	75.57	15.81	102.13
50	E7c_E7d	KnownJunction	0	13.90	14.74	8.78	11.97	0.00	9.14	44.57
51	E7d_E7e	KnownJunction	0	12.37	15.13	7.10	10.67	0.00	4.56	43.73
52	ER7f	ExonRegion	0	28.43	38.15	26.42	25.19	85.36	15.69	123.05
53	E7_Ae	KnownBoundary	1	19.93	23.49	13.74	16.42	103.62	13.86	84.01
54	ER7g	ExonRegion	0	28.23	32.19	21.39	22.01	93.94	16.88	106.82
55	ER7h	ExonRegion	0	27.20	29.64	17.75	23.69	97.51	20.84	101.73
56	ER7i	ExonRegion	0	61.34	47.19	38.61	28.99	112.91	27.50	182.25
57	E7_De	KnownBoundary	0	37.79	26.06	24.26	13.84	76.67	15.01	108.03
58	E7e_E7f	KnownJunction	0	31.39	39.46	24.99	12.11	0.00	22.86	104.07
59	E7_Af	KnownBoundary	1	15.86	29.82	18.51	11.70	32.16	11.87	66.53
60	ER7j	ExonRegion	0	56.10	64.87	45.52	28.68	118.56	31.63	187.00
61	ER7k	ExonRegion	0	46.97	49.78	31.86	23.85	114.01	24.44	134.66
62	E7_Df	KnownBoundary	0	78.96	39.20	30.49	16.25	243.69	28.94	107.03
63	ER7l	ExonRegion	0	65.34	31.84	24.42	21.97	95.29	23.68	74.58