Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TEX14	Gene	0	32.20	16.65	12.02	6.24	4.73	4.16	1.01
2	240361	Transcript	0	0.73	0.42	1.37	0.10	0.09	0.84	0.02
3	389934	Transcript	0	0	0	0	0	0	0	0
4	349033	Transcript	1	16.17	4.68	1.68	3.17	1.18	1.66	0.80
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.01	0.00	0.01	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	I1	Intron	0	20.90	1.07	3.48	0.00	0.00	0.17	0.70
8	I1_SR1	SilentIntronRegion	0	20.92	1.07	3.48	0.00	0.00	0.18	0.71
9	I1	Intron	1	19.75	7.83	50.29	8.64	0.82	4.52	0.61
10	I1_SR1	SilentIntronRegion	1	19.72	7.83	50.24	8.64	0.82	4.52	0.61
11	ER2a	ExonRegion	0	0.31	0.00	4.42	2.06	1.13	1.34	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	4.38	0.00	0.00
13	I2	Intron	0	51.12	7.29	65.30	7.59	0.99	2.14	0.52
14	I2_SR1	SilentIntronRegion	0	51.24	7.30	65.47	7.61	0.99	2.14	0.53
15	E3_Aa	NovelBoundary	0	32.81	1.08	37.51	4.80	0.00	0.00	0.00
16	ER3a	ExonRegion	0	26.45	5.02	21.68	6.55	4.86	1.87	0.41
17	E3_Da	NovelBoundary	0	25.14	0.00	26.40	2.76	1.15	2.33	0.00
18	E3a_E4a	KnownJunction	0	12.88	8.59	7.00	0.00	1.11	3.00	0.53
19	I3	Intron	0	11.70	1.85	12.70	1.83	0.26	0.94	0.17
20	I3_SR1	SilentIntronRegion	0	11.75	1.86	12.74	1.83	0.26	0.94	0.17
21	E4_Aa	NovelBoundary	0	29.89	3.76	13.80	7.67	1.01	3.24	0.79
22	ER4a	ExonRegion	0	37.65	16.70	25.25	10.86	2.38	3.21	0.02
23	E4_Da	NovelBoundary	0	16.22	2.94	15.12	3.66	0.00	3.73	0.89
24	E4a_E5a	KnownJunction	0	24.42	17.58	10.40	10.94	0.92	3.32	0.00
25	I4	Intron	0	9.52	1.14	11.89	1.77	0.09	0.58	0.11
26	I4_AR1	ActiveIntronRegion	0	8.44	0.76	13.82	1.96	0.17	1.16	0.21
27	I4_SR1	SilentIntronRegion	0	10.79	1.52	10.07	1.59	0.00	0.00	0.00
28	E5_Aa	NovelBoundary	0	14.25	2.15	18.80	6.20	0.00	0.00	0.00
29	ER5a	ExonRegion	0	22.40	10.69	11.83	6.56	2.54	2.88	0.00
30	E5_Da	NovelBoundary	0	14.14	2.84	13.94	3.36	0.00	0.00	0.00
31	E5a_E6a	KnownJunction	0	13.80	10.77	6.78	4.63	2.97	2.71	0.00
32	I5	Intron	0	16.48	2.63	18.34	2.61	0.15	0.80	0.28
33	I5_SR1	SilentIntronRegion	0	16.49	2.63	18.36	2.61	0.15	0.80	0.28
34	E6_Aa	NovelBoundary	0	19.78	3.05	22.63	1.52	0.00	2.84	0.00
35	ER6a	ExonRegion	0	16.17	11.51	9.73	6.31	2.31	5.43	0.60
36	E6_Da	NovelBoundary	0	15.42	5.18	25.39	5.20	0.00	0.00	0.00
37	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E6a_E7b	KnownJunction	0	13.47	16.08	5.12	0.00	3.02	5.84	0.00
39	E7_Ab	NovelBoundary	0	4.82	0.00	10.36	1.68	0.00	7.93	0.00
40	ER7a	ExonRegion	0	1.46	0.83	2.75	0.20	0.17	1.68	0.04
41	ER7b	ExonRegion	0	27.68	18.42	26.20	6.94	4.12	5.38	0.53
42	E7_Da	NovelBoundary	0	7.78	0.00	9.40	0.00	0.00	0.00	0.53
43	E7a_E8a	KnownJunction	0	16.62	10.64	3.85	2.55	3.07	8.17	1.63
44	E7a_E9a	NovelJunction	0	16.81	4.47	5.59	0.00	0.00	0.00	0.00
45	E8_Aa	NovelBoundary	0	5.57	1.63	11.94	0.00	0.00	0.00	0.00
46	ER8a	ExonRegion	0	36.25	12.51	9.58	6.87	3.47	2.41	1.04
47	E8_Da	NovelBoundary	1	4.44	3.15	13.24	2.82	0.00	0.00	0.00
48	E8a_E9a	KnownJunction	0	47.92	11.51	17.22	6.34	5.05	0.00	0.89
49	E9_Aa	NovelBoundary	0	55.83	1.02	28.48	0.00	0.00	3.00	0.59
50	ER9a	ExonRegion	0	53.49	21.02	20.61	9.99	3.52	5.05	2.42
51	E9_Da	NovelBoundary	0	178.83	22.17	47.74	20.05	3.02	6.43	2.55
52	E9a_E10a	KnownJunction	0	4.89	4.15	2.67	0.00	2.35	1.23	2.25
53	I9	Intron	0	34.74	8.68	16.57	5.43	0.55	3.24	0.79
54	I9_SR1	SilentIntronRegion	0	34.80	8.70	16.60	5.44	0.55	3.24	0.79
55	E10_Aa	NovelBoundary	0	17.96	12.37	16.27	8.48	0.00	3.78	1.13
56	ER10a	ExonRegion	0	23.98	23.95	12.02	4.72	2.15	2.86	1.45
57	E10_Da	NovelBoundary	0	11.08	5.54	6.93	4.28	1.18	1.13	0.00
58	E10a_E11a	KnownJunction	0	30.38	14.27	6.42	5.85	3.48	3.19	0.87
59	E11_Aa	NovelBoundary	0	12.38	4.89	11.15	2.71	0.00	0.00	0.00
60	ER11a	ExonRegion	0	23.28	14.35	12.05	7.42	1.86	4.33	0.78
61	E11a_E12a	KnownJunction	0	24.15	9.01	12.72	7.75	1.06	5.09	0.54
62	E11a_E13a	NovelJunction	0	28.99	8.09	14.33	1.19	0.00	1.13	0.00
63	E12_Aa	NovelBoundary	0	14.82	0.00	9.86	1.68	0.00	0.00	0.00
64	ER12a	ExonRegion	0	20.71	13.78	13.68	8.26	2.45	4.53	0.31
65	E12a_E13a	KnownJunction	0	22.28	15.11	9.23	1.68	1.11	1.58	0.00
66	ER13a	ExonRegion	0	24.53	20.38	14.67	3.35	2.27	4.36	1.33
67	E13a_E14a	KnownJunction	0	32.43	21.62	14.43	6.31	0.00	4.37	1.58
68	ER14a	ExonRegion	0	34.17	19.80	15.52	7.38	2.62	4.03	0.97
69	E14a_E15a	KnownJunction	0	26.99	22.09	10.95	4.36	1.13	5.07	0.00
70	ER15a	ExonRegion	0	29.90	22.81	9.27	3.51	2.85	3.51	1.14
71	E15a_E16a	KnownJunction	0	13.40	13.40	10.07	1.68	4.89	4.69	1.53
72	ER16a	ExonRegion	0	21.88	16.11	6.91	4.62	2.31	2.84	1.62
73	E16a_E17a	KnownJunction	0	30.06	19.78	6.39	5.72	3.04	1.10	3.84
74	ER17a	ExonRegion	0	39.48	21.42	9.99	6.38	3.26	5.49	1.91
75	E17a_E18a	KnownJunction	0	41.36	25.46	9.54	4.14	8.71	4.42	1.49
76	E18_Aa	NovelBoundary	0	15.12	3.86	6.68	10.27	0.00	0.00	0.00
77	ER18a	ExonRegion	0	73.01	28.99	16.54	6.75	4.87	8.93	1.53
78	E18a_E19a	KnownJunction	1	43.93	24.54	5.03	3.87	0.00	9.62	2.14
79	ER19a	ExonRegion	0	27.81	16.61	8.07	2.88	3.05	3.62	1.52
80	E19a_E20a	KnownJunction	0	9.76	4.81	0.82	1.68	0.00	2.55	0.62
81	E19a_E21a	KnownJunction	1	16.17	4.68	1.68	3.17	1.18	1.66	0.80
82	ER20a	ExonRegion	0	10.28	5.43	2.79	1.16	0.37	3.24	1.15
83	E20a_E21a	KnownJunction	0	3.96	10.40	0.89	1.52	0.00	1.58	0.00
84	ER21a	ExonRegion	0	23.78	17.04	6.13	2.10	4.98	4.63	0.64
85	E21_Da	NovelBoundary	0	6.63	0.00	10.06	0.00	0.00	1.05	0.00
86	E21a_E22a	KnownJunction	0	29.61	18.63	9.31	2.52	5.51	6.22	0.89
87	ER22a	ExonRegion	0	46.02	25.82	12.54	7.10	6.66	4.72	2.01
88	E22a_E23a	KnownJunction	0	34.41	22.25	8.41	3.68	3.07	5.52	0.75
89	ER23a	ExonRegion	0	30.03	23.49	9.41	5.11	3.34	6.97	0.51
90	E23a_E24a	KnownJunction	0	34.60	19.65	10.17	7.67	5.09	6.24	1.38
91	ER24a	ExonRegion	0	68.32	22.06	13.90	10.02	7.48	6.50	2.08
92	E24a_E25a	KnownJunction	1	81.91	21.94	14.64	8.67	1.87	9.14	0.89
93	ER25a	ExonRegion	0	73.40	17.37	16.26	10.53	6.59	5.21	2.09
94	E25_Da	NovelBoundary	0	18.13	4.41	4.08	1.33	1.18	0.00	0.00
95	E25a_E26a	KnownJunction	0	48.70	13.56	12.11	2.76	3.23	1.31	1.88
96	E26_Aa	NovelBoundary	0	13.30	1.42	2.56	5.15	0.00	2.09	0.00
97	ER26a	ExonRegion	1	39.95	13.97	7.13	3.23	5.49	3.89	1.48
98	E26a_E27a	KnownJunction	0	16.52	13.16	3.03	0.00	2.49	0.00	1.75
99	ER27a	ExonRegion	0	18.55	16.46	4.47	0.61	2.89	0.53	1.34
100	E27a_E28a	KnownJunction	0	14.12	11.38	5.09	1.68	0.00	2.47	0.86
101	I27_AR1	ActiveIntronRegion	0	11.22	4.51	4.55	2.94	0.14	0.94	0.00
102	I27_SR2	SilentIntronRegion	0	15.03	1.99	5.74	3.08	0.27	1.30	0.00
103	E28_Aa	NovelBoundary	0	13.97	3.91	6.93	2.17	16.34	1.53	0.00
104	ER28a	ExonRegion	0	19.39	24.80	3.88	10.71	12.33	2.31	0.61
105	E28a_E29a	KnownJunction	1	23.58	31.79	2.63	17.85	15.28	1.50	0.89
106	ER29a	ExonRegion	0	33.67	25.46	8.48	10.84	15.35	2.94	0.69
107	E29a_E30a	KnownJunction	1	22.65	9.51	3.12	15.58	26.90	4.07	0.54
108	ER30a	ExonRegion	0	20.80	7.60	4.00	6.42	21.32	3.98	0.05
109	E30a_E31a	KnownJunction	0	16.77	9.17	3.58	2.71	17.80	4.98	0.00
110	ER31a	ExonRegion	1	29.63	8.68	4.51	4.11	16.65	2.84	1.06
111	E31a_E32a	KnownJunction	1	34.92	10.17	3.18	3.36	20.01	7.77	1.61
112	ER32a	ExonRegion	1	35.97	12.73	3.47	6.35	19.02	4.62	0.66
113	E32a_E33a	KnownJunction	1	28.16	14.63	3.15	7.34	16.28	2.55	0.00
114	E33_Aa	NovelBoundary	0	18.36	7.22	11.70	1.68	1.18	4.61	1.45
115	ER33a	ExonRegion	0	16.81	13.53	7.09	4.82	7.52	5.20	0.97