Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SPAG9	Gene	0	238.76	374.46	341.96	536.66	139.62	712.76	283.81
2	262013	Transcript	1	16.71	14.52	84.66	122.00	3.09	382.41	25.98
3	376407	Transcript	0	0	0	0	0	0	0	0
4	357122	Transcript	0	0	0	0	0	0	0	0
5	357804	Transcript	0	0.73	0.54	0.82	1.98	0.00	1.97	0.00
6	357791	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	356471	Transcript	0	6.92	2.59	4.54	3.00	7.26	3.64	2.50
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.72	0.00
9	ER1b	ExonRegion	0	60.98	219.85	85.72	264.86	14.20	441.92	80.13
10	E1a_E2a	KnownJunction	0	283.95	626.65	369.25	842.86	57.59	1411.09	282.47
11	ER2a	ExonRegion	0	259.90	534.40	452.82	748.90	71.84	1129.83	316.03
12	E2a_E3a	KnownJunction	0	190.05	440.31	396.64	612.67	70.59	1004.43	303.98
13	E2a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E6a	NovelJunction	0	2.42	21.23	0.62	9.70	0.00	10.32	0.00
15	ER3a	ExonRegion	0	220.89	478.02	419.38	622.13	79.68	881.73	286.76
16	E3a_E4a	KnownJunction	0	228.50	426.60	435.31	596.84	71.00	700.04	254.45
17	ER4a	ExonRegion	0	240.52	488.46	521.06	683.56	94.31	848.53	373.62
18	E4a_E6a	KnownJunction	0	213.60	475.22	446.69	686.11	100.42	828.89	342.35
19	ER5a	ExonRegion	0	14.37	3.27	7.71	2.43	16.51	1.28	0.84
20	E5_Ab	KnownBoundary	0	14.22	2.89	6.75	4.52	19.80	2.71	0.00
21	ER5b	ExonRegion	0	16.50	3.59	6.42	2.15	31.03	2.66	0.04
22	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	28.47	3.22	0.00
23	ER6a	ExonRegion	0	250.96	526.97	469.51	638.45	127.77	810.86	351.28
24	E6a_E7a	KnownJunction	0	65.19	118.46	86.06	92.60	37.69	74.15	121.16
25	E6a_E8a	KnownJunction	0	198.91	439.21	370.63	638.59	84.60	722.12	237.26
26	I6_AR3	ActiveIntronRegion	1	55.14	27.38	30.28	11.95	3.41	8.68	5.37
27	ER7a	ExonRegion	0	59.00	119.55	83.16	120.57	35.61	104.88	140.46
28	E7a_E8a	KnownJunction	1	33.83	86.93	54.85	108.36	35.46	111.35	109.94
29	I7_AR1	ActiveIntronRegion	1	50.96	12.02	22.20	4.83	4.78	6.04	4.17
30	ER8a	ExonRegion	0	299.69	594.00	493.71	762.19	153.12	922.57	392.48
31	E8a_E9a	KnownJunction	0	291.86	461.51	477.87	707.92	158.67	768.00	350.62
32	I8_SR1	SilentIntronRegion	1	47.81	23.15	33.10	13.92	1.79	15.44	3.37
33	ER9a	ExonRegion	0	333.73	487.01	539.46	671.85	170.18	740.59	366.33
34	E9a_E10a	KnownJunction	0	314.24	415.93	500.94	657.01	166.79	678.68	347.88
35	ER10a	ExonRegion	0	334.46	401.06	470.63	613.26	147.26	661.27	312.04
36	E10_Da	KnownBoundary	0	167.62	183.27	219.71	256.09	76.30	322.11	122.29
37	E10a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E10_Db	KnownBoundary	0	141.75	174.55	183.28	259.83	45.67	252.13	113.45
39	E10b_E17c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER10b	ExonRegion	0	347.79	413.05	437.86	585.82	129.58	630.65	278.07
41	ER10c	ExonRegion	0	385.21	409.34	479.61	594.36	126.08	619.06	303.17
42	E10c_E11a	KnownJunction	0	415.36	379.46	496.57	584.44	157.24	625.16	309.14
43	ER11a	ExonRegion	0	446.54	399.14	557.70	609.18	189.09	688.88	356.95
44	E11a_E12a	KnownJunction	0	415.81	431.01	522.95	568.78	211.92	709.36	379.75
45	ER12a	ExonRegion	0	521.02	524.37	597.13	746.91	195.97	877.79	386.77
46	E12a_E13a	KnownJunction	0	437.43	496.61	547.90	783.83	146.06	875.25	342.81
47	ER13a	ExonRegion	0	500.34	578.69	621.33	840.74	200.39	962.43	468.41
48	E13a_E14a	KnownJunction	0	434.91	519.91	527.84	705.40	275.60	833.18	436.48
49	ER14a	ExonRegion	0	345.30	464.93	509.76	686.50	202.83	770.72	381.70
50	E14a_E15a	KnownJunction	0	222.93	414.62	367.32	656.28	162.36	767.20	314.95
51	ER15a	ExonRegion	0	207.96	404.42	393.50	582.79	153.06	693.63	306.19
52	E15a_E16a	KnownJunction	0	0.00	0.00	1.28	1.14	0.00	1.58	0.00
53	E15a_E17a	KnownJunction	0	188.16	379.28	395.64	513.32	146.92	583.78	287.73
54	E16a_E17a	KnownJunction	0	0.77	0.00	0.00	1.57	0.00	1.47	0.00
55	ER16a	ExonRegion	0	1.41	1.62	1.19	3.22	0.00	2.86	0.00
56	I16	Intron	1	70.71	26.32	44.07	31.89	3.26	12.79	5.25
57	I16_SR1	SilentIntronRegion	1	70.86	26.37	44.16	31.97	3.27	12.81	5.26
58	ER17a	ExonRegion	0	222.81	393.17	420.25	626.27	158.74	720.34	335.99
59	E17_Ab	KnownBoundary	1	84.83	170.40	150.26	315.48	66.30	289.22	152.10
60	E17_Ac	KnownBoundary	0	101.56	143.28	166.55	239.81	82.58	315.97	119.90
61	ER17b	ExonRegion	0	177.22	311.00	308.04	548.51	140.41	605.18	280.38
62	ER17c	ExonRegion	0	215.58	314.09	353.55	536.17	128.79	616.09	281.50
63	E17a_E18a	KnownJunction	0	224.68	309.85	384.19	558.54	110.01	617.36	280.18
64	E17a_E19a	NovelJunction	1	0.00	26.06	4.10	3.79	1.18	18.84	1.62
65	I17_SR2	SilentIntronRegion	1	65.28	19.88	25.12	8.24	3.45	11.74	3.65
66	ER18a	ExonRegion	0	310.28	354.20	400.69	577.14	164.69	655.64	308.40
67	E18_Da	NovelBoundary	1	171.01	53.88	189.10	47.06	2.93	62.79	17.21
68	E18a_E19a	KnownJunction	0	308.68	308.11	428.64	554.96	123.61	654.96	321.96
69	I18	Intron	1	69.06	42.56	52.76	26.53	6.13	29.98	11.23
70	I18_AR1	ActiveIntronRegion	0	59.08	46.19	49.99	26.70	5.97	33.61	12.33
71	I18_SR1	SilentIntronRegion	1	98.89	44.25	66.04	28.32	7.09	34.48	11.98
72	ER19a	ExonRegion	0	357.40	372.21	534.97	644.93	181.57	763.92	354.97
73	E19a_E20a	KnownJunction	0	4.76	5.78	7.40	17.64	0.90	17.98	2.12
74	E19a_E20b	KnownJunction	0	387.09	436.05	548.86	738.48	188.55	851.19	376.59
75	E20_Ab	NovelBoundary	1	196.81	3.42	236.91	1.68	1.06	3.81	3.53
76	ER20a	ExonRegion	0	130.25	127.86	180.86	213.23	59.93	234.47	117.04
77	ER20b	ExonRegion	0	380.83	435.36	523.11	639.68	186.75	743.64	363.38
78	E20a_E21a	KnownJunction	0	310.63	372.66	490.14	600.26	143.71	638.96	379.91
79	E21_Aa	NovelBoundary	1	75.51	17.76	23.01	7.50	2.19	10.13	6.68
80	ER21a	ExonRegion	0	272.45	414.76	428.91	643.09	183.36	739.00	392.55
81	E21_Da	NovelBoundary	1	64.37	18.60	19.08	12.41	2.79	9.86	3.90
82	E21a_E22a	KnownJunction	0	215.47	405.71	352.12	667.36	139.31	717.43	347.62
83	ER22a	ExonRegion	0	196.72	449.05	344.37	674.99	174.34	772.48	375.45
84	E22a_E23a	KnownJunction	0	224.20	500.10	369.36	645.80	152.79	819.56	373.72
85	ER23a	ExonRegion	0	239.48	495.20	397.98	686.12	190.03	824.06	387.45
86	E23a_E24a	KnownJunction	0	259.53	422.31	444.75	723.28	212.29	750.77	375.71
87	ER24a	ExonRegion	0	395.66	493.77	550.31	778.41	235.80	913.68	412.59
88	E24a_E25a	KnownJunction	0	436.71	515.84	517.22	839.26	204.57	981.89	379.78
89	ER25a	ExonRegion	0	378.85	468.77	509.66	720.27	223.97	886.37	414.55
90	E25a_E26a	KnownJunction	0	384.04	447.43	485.09	662.46	240.33	808.68	435.22
91	E25a_E27a	NovelJunction	0	4.52	9.54	1.51	11.32	0.00	19.46	0.57
92	ER26a	ExonRegion	0	346.00	405.08	414.17	591.50	209.33	756.85	366.42
93	E26a_E27a	KnownJunction	0	299.22	390.81	344.57	524.97	201.18	720.03	308.30
94	ER27a	ExonRegion	0	290.96	439.89	341.38	614.45	217.88	752.10	380.28
95	E27_Da	NovelBoundary	0	227.03	309.87	276.50	467.38	96.55	608.35	301.38
96	E27b_E35b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
97	E27c_E28a	KnownJunction	0	343.10	508.14	389.01	688.06	206.35	885.46	366.37
98	ER27b	ExonRegion	0	356.55	488.37	401.91	725.73	221.90	901.93	436.01
99	ER27c	ExonRegion	0	348.39	510.87	411.62	709.66	216.44	897.88	413.50
100	ER28a	ExonRegion	0	277.91	476.78	342.02	618.04	204.24	821.80	358.37
101	E28a_E29a	KnownJunction	0	297.16	442.62	350.98	596.22	197.56	809.38	307.45
102	ER29a	ExonRegion	0	258.31	462.70	354.51	628.75	189.11	839.66	346.99
103	E29_Da	NovelBoundary	1	105.45	48.29	97.09	65.48	11.30	75.33	34.08
104	E29a_E30a	KnownJunction	1	22.03	13.92	96.83	147.10	2.12	503.70	37.38
105	E29a_E31a	KnownJunction	0	138.01	374.68	135.87	435.44	174.65	241.20	271.05
106	I29	Intron	0	69.62	34.36	65.56	23.58	8.41	51.47	23.36
107	I29_AR1	ActiveIntronRegion	0	69.72	34.41	65.66	23.61	8.42	51.55	23.40
108	ER30a	ExonRegion	1	23.35	20.81	122.85	182.18	3.61	565.56	39.59
109	E30a_E31a	KnownJunction	1	21.46	23.33	118.96	158.70	6.64	458.65	26.96
110	I30	Intron	0	57.09	25.84	40.70	18.47	7.68	23.27	16.35
111	I30_AR1	ActiveIntronRegion	0	57.21	25.89	40.78	18.51	7.70	23.31	16.38
112	E31_Aa	NovelBoundary	1	72.99	26.80	46.85	45.92	13.53	49.45	18.66
113	ER31a	ExonRegion	0	256.40	484.87	329.05	730.28	191.58	981.42	363.30
114	E31a_E33a	KnownJunction	0	133.62	338.45	216.27	653.30	125.89	894.50	304.18
115	ER32a	ExonRegion	0	1.54	1.21	1.52	1.25	2.83	2.45	1.86
116	ER33a	ExonRegion	0	178.96	376.79	233.93	598.47	169.59	795.73	304.05
117	E33a_E34a	KnownJunction	0	193.45	408.36	245.43	635.80	181.10	891.23	281.77
118	ER34a	ExonRegion	0	284.84	429.12	353.80	615.56	192.32	1038.81	328.46
119	E34_Da	KnownBoundary	0	284.50	418.90	379.23	609.09	146.25	1256.80	313.69
120	ER34b	ExonRegion	0	212.99	272.94	280.44	405.55	123.04	865.63	199.87
121	E34_Db	NovelBoundary	0	91.18	39.54	167.63	69.71	35.66	141.40	79.87
122	I34	Intron	1	55.48	51.43	107.01	78.90	45.06	109.93	84.20
123	I34_AR1	ActiveIntronRegion	1	55.57	51.52	107.19	79.03	45.13	110.12	84.34
124	E35_Aa	NovelBoundary	0	415.81	412.01	846.67	264.30	44.47	215.85	322.04
125	E35_Ab	NovelBoundary	0	428.33	238.31	315.75	196.06	58.81	220.35	387.08
126	ER35a	ExonRegion	0	11.78	5.87	8.92	8.31	9.72	10.83	7.31
127	ER35b	ExonRegion	0	31.81	15.44	33.09	19.02	17.67	34.66	14.69
128	IG1_AR28	ActiveIntergenicRegion	0	74.98	19.85	64.34	51.96	59.53	119.83	41.33
129	IG1_SR19	SilentIntergenicRegion	0	13.06	5.30	13.30	7.94	8.54	27.64	5.15
130	IG1_AR27	ActiveIntergenicRegion	0	83.30	74.59	133.48	144.30	66.47	284.31	110.31
131	IG1_AR3	ActiveIntergenicRegion	0	40.60	206.08	9.42	133.93	3.84	228.57	63.15
132	IG1_SR1	SilentIntergenicRegion	0	2.50	2.12	3.52	15.35	0.11	14.96	0.79
133	IG1_AR2	ActiveIntergenicRegion	0	67.21	19.93	96.06	53.72	2.80	97.81	11.83
134	IG1_AR1	ActiveIntergenicRegion	0	89.25	21.51	121.44	57.88	4.05	91.41	21.32