Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SSH2	Gene	0	35.84	20.15	12.58	20.14	29.03	19.74	19.81
2	394848	Transcript	0	11.16	5.68	6.16	4.18	18.33	4.04	3.83
3	269033	Transcript	0	38.24	25.94	15.58	26.76	24.92	25.49	26.86
4	324677	Transcript	0	7.23	4.57	2.41	6.19	2.54	9.40	4.53
5	IG14_AR2	ActiveIntergenicRegion	0	3.48	7.97	1.52	1.60	0.21	0.47	0.52
6	ER1a	ExonRegion	0	2.88	4.53	1.14	1.64	3.33	1.67	0.81
7	E1_Da	NovelBoundary	0	2.75	10.77	1.31	4.01	2.10	6.24	2.05
8	E1a_E2a	KnownJunction	0	5.32	8.62	3.12	6.75	3.87	6.54	2.64
9	I1_AR1	ActiveIntronRegion	1	3.39	8.51	0.83	4.29	1.11	0.02	0.94
10	I1_AR2	ActiveIntronRegion	0	13.14	3.77	3.70	2.73	2.27	0.22	1.44
11	I1_SR2	SilentIntronRegion	0	12.31	3.60	4.89	2.27	2.33	0.70	1.35
12	I1_AR5	ActiveIntronRegion	0	11.58	0.00	5.47	2.49	0.00	0.00	1.16
13	I1_AR6	ActiveIntronRegion	0	12.16	2.58	2.36	1.13	1.57	0.84	2.04
14	I1_AR7	ActiveIntronRegion	0	12.72	1.00	5.60	0.80	1.30	2.38	1.77
15	I1_AR8	ActiveIntronRegion	0	15.39	4.09	4.16	0.72	2.38	0.25	3.05
16	I1_AR9	ActiveIntronRegion	0	12.66	4.89	4.37	0.40	1.83	0.32	0.97
17	I1_AR13	ActiveIntronRegion	0	15.15	5.77	4.39	7.17	5.23	1.56	4.42
18	I1_SR11	SilentIntronRegion	0	12.97	3.56	3.30	2.49	1.63	0.42	3.36
19	ER2a	ExonRegion	0	7.79	18.44	6.07	8.08	8.65	10.20	1.84
20	E2a_E4a	KnownJunction	1	10.15	22.07	11.55	18.67	16.83	18.92	2.16
21	I2	Intron	0	13.21	3.14	5.19	2.32	4.53	1.14	2.32
22	I2_SR1	SilentIntronRegion	0	17.32	5.24	8.57	3.16	5.89	2.37	1.98
23	I2_AR2	ActiveIntronRegion	0	20.94	5.61	8.16	3.09	7.98	3.44	3.11
24	I2_AR3	ActiveIntronRegion	0	21.21	3.94	5.76	3.50	8.33	3.35	2.96
25	I2_SR3	SilentIntronRegion	0	11.88	2.58	3.60	2.89	4.68	1.06	2.23
26	I2_AR4	ActiveIntronRegion	0	20.60	9.16	8.73	5.05	8.75	2.10	4.76
27	I2_AR5	ActiveIntronRegion	0	24.93	10.78	9.34	3.45	8.36	5.53	5.07
28	I2_SR4	SilentIntronRegion	0	16.37	6.21	8.00	1.94	4.56	1.74	3.46
29	I2_AR6	ActiveIntronRegion	0	14.75	3.64	6.69	1.27	5.41	0.77	4.35
30	I2_SR5	SilentIntronRegion	0	13.25	2.27	5.17	1.92	3.97	0.67	2.07
31	I2_AR7	ActiveIntronRegion	0	13.66	3.38	5.13	1.98	3.30	0.52	3.65
32	ER3a	ExonRegion	0	1.21	0.73	1.24	1.74	1.41	7.58	3.74
33	E3a_E4a	KnownJunction	1	0.00	0.00	0.60	1.57	1.18	10.24	6.13
34	I3_AR1	ActiveIntronRegion	0	18.78	3.68	6.18	1.53	4.31	0.19	5.60
35	I3_AR3	ActiveIntronRegion	0	13.04	6.55	6.50	4.24	3.97	1.32	6.88
36	I3_AR4	ActiveIntronRegion	0	20.06	5.16	6.26	3.88	5.98	3.52	5.82
37	I3_AR10	ActiveIntronRegion	0	12.36	3.05	5.08	1.22	3.04	0.49	2.13
38	ER4a	ExonRegion	0	20.81	27.14	12.04	21.73	14.73	26.52	15.37
39	E4a_E5a	KnownJunction	0	18.51	32.39	12.36	23.92	24.69	32.72	23.30
40	ER5a	ExonRegion	1	21.52	29.46	13.06	16.33	18.25	36.36	18.49
41	E5a_E6a	KnownJunction	1	19.18	20.31	12.53	10.92	20.08	36.80	18.30
42	ER6a	ExonRegion	0	28.97	31.22	16.95	23.04	24.35	29.36	24.00
43	E6a_E7a	KnownJunction	0	34.53	28.95	13.84	25.28	32.04	32.03	17.90
44	ER7a	ExonRegion	0	29.20	34.37	12.67	32.04	35.68	30.70	24.75
45	E7a_E8a	KnownJunction	0	25.72	29.87	11.78	32.48	34.30	32.00	26.83
46	ER8a	ExonRegion	0	39.85	29.06	17.22	30.95	31.79	25.76	28.11
47	E8a_E9a	KnownJunction	0	11.10	9.09	3.75	11.92	4.59	9.86	3.44
48	E8a_E10a	KnownJunction	0	29.07	29.84	17.60	19.72	29.99	19.56	22.80
49	ER9a	ExonRegion	0	16.63	8.44	4.05	9.53	2.97	9.91	4.79
50	E10_Aa	NovelBoundary	0	11.43	11.45	4.24	15.98	3.25	7.99	3.97
51	ER10a	ExonRegion	0	34.80	33.85	13.05	25.11	24.31	19.74	20.47
52	E10a_E11a	KnownJunction	1	39.10	38.04	20.58	21.43	14.73	16.72	10.48
53	ER11a	ExonRegion	0	46.34	41.49	16.22	28.04	24.64	25.82	15.15
54	E11a_E12a	KnownJunction	0	51.09	40.93	19.10	35.73	14.78	24.12	20.14
55	ER12a	ExonRegion	0	57.56	46.15	22.66	28.71	26.29	25.16	20.09
56	E12a_E13a	KnownJunction	0	50.52	30.97	12.49	27.99	30.29	29.35	15.72
57	ER13a	ExonRegion	0	52.53	29.21	14.20	23.77	28.67	24.86	14.90
58	E13a_E14a	KnownJunction	0	38.10	19.18	15.99	16.09	28.79	14.31	14.04
59	ER14a	ExonRegion	0	75.23	32.64	20.84	28.53	37.56	20.52	22.61
60	E14a_E15a	KnownJunction	0	86.30	47.79	26.08	36.57	41.91	35.75	31.63
61	ER15a	ExonRegion	0	78.01	43.31	20.51	32.48	38.94	31.41	30.60
62	E15_Da	KnownBoundary	0	3.37	0.00	0.00	0.00	0.00	2.39	0.64
63	E15a_E16a	KnownJunction	0	41.04	30.92	18.70	20.51	19.27	26.08	31.44
64	ER15b	ExonRegion	0	11.16	5.68	6.16	4.18	18.33	4.04	3.83
65	ER16a	ExonRegion	0	35.69	24.69	12.94	28.01	25.01	23.41	28.77
66	E16a_E17a	KnownJunction	0	39.17	29.45	17.85	38.58	23.33	32.51	26.79
67	ER17a	ExonRegion	0	37.06	18.71	12.82	19.96	32.06	19.95	20.45