Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LRRC48	Gene	0	5.05	6.83	5.67	5.40	2.47	5.10	2.62
2	399184	Transcript	0	0	0	0	0	0	0	0
3	313838	Transcript	0	0	0	0	0	0	0	0
4	399187	Transcript	0	0	0	0	0	0	0	0
5	399182	Transcript	0	3.85	3.54	7.20	4.03	3.86	3.65	3.29
6	399185	Transcript	0	0.38	0.00	0.53	1.61	1.65	0.00	0.55
7	ER1a	ExonRegion	0	0.96	2.66	0.68	0.66	0.00	0.83	1.60
8	E1_Ab	KnownBoundary	0	2.54	6.23	1.55	4.20	0.00	1.66	3.32
9	ER1b	ExonRegion	0	3.63	5.65	0.42	1.31	0.00	1.23	2.02
10	E1a_E3a	KnownJunction	0	4.99	4.49	0.00	1.03	0.00	0.00	0.60
11	ER2a	ExonRegion	0	0.75	0.00	1.05	1.60	3.31	0.00	0.41
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	1.63	0.00	0.00	0.69
13	ER3a	ExonRegion	0	2.37	4.05	1.95	6.07	0.74	3.21	2.56
14	E3a_E4a	KnownJunction	0	0.00	5.39	1.68	2.63	0.00	2.89	3.10
15	E4_Aa	NovelBoundary	0	2.92	4.89	3.46	10.92	0.00	2.36	0.67
16	ER4a	ExonRegion	0	2.48	9.58	2.89	6.66	1.63	5.70	2.14
17	E4_Da	NovelBoundary	0	0.00	0.00	1.31	8.43	1.18	6.16	0.57
18	E4a_E5a	KnownJunction	0	1.59	14.32	1.32	2.60	0.00	8.63	0.62
19	ER5a	ExonRegion	0	2.31	12.91	1.99	2.62	0.40	8.19	1.08
20	E5a_E6a	KnownJunction	0	2.17	11.93	2.79	4.42	0.88	4.42	0.79
21	ER6a	ExonRegion	0	4.51	10.44	3.34	5.64	0.39	9.21	1.13
22	E6a_E7a	KnownJunction	0	4.07	8.38	2.85	8.64	1.04	10.37	0.00
23	ER7a	ExonRegion	0	5.00	7.13	4.06	9.36	0.36	8.36	0.36
24	E7a_E8a	KnownJunction	0	0.00	1.31	2.27	0.00	0.00	3.94	0.00
25	ER8a	ExonRegion	0	4.66	7.90	3.53	0.79	1.26	5.26	0.84
26	E8a_E9a	KnownJunction	0	3.76	4.99	3.06	0.00	1.04	2.49	2.51
27	ER9a	ExonRegion	0	2.55	8.31	2.93	1.27	0.10	3.41	2.29
28	E9a_E10a	KnownJunction	0	4.69	3.78	2.64	1.68	0.00	2.68	2.91
29	ER10a	ExonRegion	0	4.39	6.36	3.61	4.15	0.70	2.44	1.99
30	E10a_E11a	KnownJunction	0	3.47	4.83	2.93	5.77	0.00	1.10	0.64
31	E11_Aa	NovelBoundary	0	8.46	5.96	13.54	9.43	8.71	1.23	8.38
32	ER11a	ExonRegion	0	9.91	8.16	8.09	13.36	7.76	6.22	6.34
33	E11_Da	NovelBoundary	0	6.51	6.86	7.65	13.90	5.56	3.70	6.12
34	E11a_E12a	KnownJunction	0	3.17	5.81	4.31	3.25	0.00	0.00	1.59
35	I11	Intron	0	5.94	6.03	8.96	8.06	5.10	2.85	6.03
36	I11_AR1	ActiveIntronRegion	0	5.95	6.04	8.97	8.07	5.11	2.85	6.03
37	E12_Aa	NovelBoundary	0	13.12	7.59	14.28	22.03	5.26	6.57	4.90
38	ER12a	ExonRegion	0	4.73	4.77	3.91	5.50	1.79	3.78	1.25
39	E12_Da	NovelBoundary	0	1.87	2.71	9.24	1.27	3.09	3.24	7.58
40	E12a_E13a	KnownJunction	0	2.32	4.26	3.10	3.17	0.88	5.25	0.59
41	E12_Db	NovelBoundary	0	2.34	1.63	10.76	5.45	2.03	5.95	4.11
42	E12b_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER12b	ExonRegion	0	0.77	1.21	0.68	0.00	0.00	0.00	0.00
44	I12	Intron	0	5.50	8.03	7.85	8.24	4.34	4.59	6.78
45	I12_AR1	ActiveIntronRegion	0	5.51	8.05	7.87	8.26	4.35	4.61	6.80
46	ER13a	ExonRegion	0	2.31	4.86	3.73	4.36	0.81	6.13	1.35
47	ER13b	ExonRegion	0	4.55	5.82	5.39	4.38	0.60	7.40	1.24
48	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E13a_E15a	KnownJunction	0	8.03	8.83	4.58	4.01	0.00	1.66	0.54
50	E14_Aa	NovelBoundary	0	9.90	2.60	6.90	3.87	6.52	5.52	2.64
51	ER14a	ExonRegion	0	0.86	0.63	5.22	1.17	1.05	0.00	1.41
52	E14_Da	KnownBoundary	0	1.55	2.44	10.48	1.68	2.10	0.00	3.78
53	ER14b	ExonRegion	0	3.85	3.54	7.20	4.03	3.86	3.65	3.29
54	I14	Intron	0	7.02	4.61	8.97	6.17	5.92	3.33	4.48
55	I14_AR1	ActiveIntronRegion	0	7.91	6.60	10.72	9.03	9.39	4.96	5.52
56	E15_Aa	NovelBoundary	0	12.68	8.43	10.32	12.81	17.45	11.42	4.94
57	ER15a	ExonRegion	0	10.13	12.96	15.24	13.83	8.69	5.74	8.11
58	E15_Da	NovelBoundary	0	10.51	5.65	11.37	17.04	11.34	7.29	4.11
59	E15a_E16a	KnownJunction	0	4.91	6.88	4.17	1.14	0.00	2.71	1.78
60	I15	Intron	0	7.29	5.09	9.07	5.49	6.50	5.15	5.21
61	I15_AR1	ActiveIntronRegion	0	7.32	5.12	9.12	5.52	6.54	5.18	5.24
62	E16_Aa	NovelBoundary	0	4.41	9.01	7.50	6.85	2.28	5.84	3.53
63	ER16a	ExonRegion	0	11.06	7.62	12.01	6.26	3.95	6.99	4.07
64	E16_Da	KnownBoundary	0	10.53	1.02	9.93	6.10	4.91	3.16	0.57
65	ER16b	ExonRegion	0	2.86	0.29	3.12	0.30	1.60	2.12	0.37