Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CCDC144A	Gene	0	4.93	2.62	6.68	3.72	5.39	6.72	2.60
2	340621	Transcript	0	3.21	2.08	1.65	1.45	2.60	0.84	0.19
3	399273	Transcript	0	2.50	0.65	5.75	1.39	6.10	2.23	1.34
4	399264	Transcript	0	0.48	0.46	0.57	0.33	1.39	0.28	0.43
5	360524	Transcript	0	5.97	3.47	7.07	4.35	8.69	7.13	2.99
6	328495	Transcript	0	5.63	8.23	9.51	13.55	4.70	13.44	1.74
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1c	ExonRegion	0	0.00	0.00	0.00	0.31	0.00	0.00	0.00
10	ER1d	ExonRegion	0	0.00	0.38	0.00	0.77	0.00	0.38	0.00
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.54	0.00	0.00
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	1.10	1.36	0.94	1.47	0.35	0.00	0.21
15	E3_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E3a_E4a	KnownJunction	0	0.00	1.21	0.00	1.33	0.00	0.00	0.00
17	E3a_E4b	KnownJunction	0	5.51	4.44	3.05	2.87	0.00	1.39	0.00
18	ER3b	ExonRegion	0	0.48	0.46	0.57	0.33	1.39	0.28	0.43
19	ER4a	ExonRegion	0	0.96	0.91	0.51	0.62	0.81	0.00	0.00
20	ER4b	ExonRegion	0	3.20	2.63	1.44	2.17	1.62	0.00	0.00
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4c	ExonRegion	0	1.98	1.00	0.39	0.89	0.38	0.00	0.00
24	ER5a	ExonRegion	0	0.30	0.08	0.00	0.23	0.77	0.00	0.06
25	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
26	ER6a	ExonRegion	0	1.32	2.49	0.65	0.00	0.44	2.11	1.03
27	E6_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER6b	ExonRegion	0	4.11	1.80	1.91	1.48	7.79	1.14	0.57
30	ER7a	ExonRegion	0	0.16	0.29	0.32	0.40	0.83	0.00	0.67
31	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER8a	ExonRegion	0	2.98	2.28	1.09	5.05	0.35	4.81	1.05
33	E8a_E9a	KnownJunction	0	3.00	1.63	4.38	1.63	0.00	8.20	1.71
34	ER9a	ExonRegion	0	2.00	0.89	1.35	3.18	0.45	4.21	0.20
35	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER10a	ExonRegion	0	1.28	4.34	2.88	8.72	1.05	7.52	0.88
37	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER11a	ExonRegion	0	1.92	4.06	2.93	3.03	1.64	3.65	0.13
39	E11a_E12a	KnownJunction	0	0.77	0.00	0.00	0.00	2.10	0.99	0.00
40	ER12a	ExonRegion	0	3.19	1.16	3.13	2.70	1.46	1.47	0.49
41	E12a_E13a	KnownJunction	0	10.56	15.32	15.58	20.26	7.58	16.05	4.01
42	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER13a	ExonRegion	0	9.52	12.43	14.94	25.56	8.53	26.19	2.69
44	E13a_E14a	KnownJunction	0	6.88	13.00	16.32	21.65	7.38	24.98	0.76
45	ER14a	ExonRegion	0	5.81	2.36	12.79	8.65	6.29	13.55	2.90
46	E14a_E15a	KnownJunction	0	3.76	0.00	5.33	3.14	5.09	1.47	0.00
47	ER15a	ExonRegion	0	2.23	2.28	4.17	2.95	2.61	1.21	0.72
48	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER16a	ExonRegion	0	0.55	11.04	0.43	7.59	2.03	6.22	0.71
50	E16_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER16b	ExonRegion	0	1.18	0.38	0.69	0.28	0.00	0.00	1.26
53	ER17a	ExonRegion	0	0.32	3.53	2.52	5.16	2.07	8.15	1.22
54	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER18a	ExonRegion	0	4.20	0.29	8.98	1.23	2.45	0.73	1.60
56	E18_Da	KnownBoundary	0	17.14	5.70	21.79	10.10	0.00	20.21	8.20
57	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER18b	ExonRegion	0	2.50	0.65	5.75	1.39	6.10	2.23	1.34
59	E18_Db	NovelBoundary	0	89.29	23.62	71.36	26.06	13.60	69.17	20.35
60	E19_Aa	NovelBoundary	0	14.45	17.81	20.54	12.76	3.04	17.15	10.33
61	ER19a	ExonRegion	0	5.91	6.57	5.79	0.00	5.12	7.47	3.68
62	E19_Da	NovelBoundary	0	2.92	9.62	7.69	6.47	5.07	9.54	10.00
63	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E20_Aa	NovelBoundary	0	46.03	8.72	56.45	13.57	7.38	21.33	9.79
65	ER20a	ExonRegion	0	2.21	0.08	0.74	1.12	6.55	1.01	0.21
66	E20_Da	NovelBoundary	0	57.40	7.64	57.34	8.86	8.99	18.14	9.43
67	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	1.58	0.00
68	E21_Aa	NovelBoundary	0	83.02	42.01	74.32	49.41	67.68	32.00	54.46
69	ER21a	ExonRegion	0	34.93	28.68	30.35	29.48	22.13	26.22	20.59
70	E21_Da	NovelBoundary	0	9.88	9.83	13.54	16.09	11.13	9.81	14.27
71	E21a_E22a	KnownJunction	0	5.19	1.47	6.29	4.63	4.13	5.71	3.21
72	E21a_E23a	NovelJunction	0	18.04	9.64	6.35	26.25	5.65	21.95	7.95
73	E22_Aa	NovelBoundary	0	10.05	9.27	9.92	10.89	3.20	12.57	9.96
74	ER22a	ExonRegion	0	6.78	3.71	11.65	7.90	15.01	12.74	4.92
75	E22a_E23a	KnownJunction	0	11.75	4.41	11.97	7.02	7.91	14.82	0.75
76	I22_AR3	ActiveIntronRegion	0	8.08	7.50	11.08	4.13	10.55	3.79	4.82
77	I22_AR6	ActiveIntronRegion	0	6.59	5.66	10.32	5.77	8.08	9.49	5.87
78	I22_SR6	SilentIntronRegion	0	5.68	6.58	9.50	2.92	6.75	5.50	8.66
79	I22_AR7	ActiveIntronRegion	0	5.69	2.57	10.52	3.06	5.11	4.30	7.97
80	ER23a	ExonRegion	0	14.48	6.61	14.27	6.35	16.68	16.94	7.15
81	E23a_E24a	KnownJunction	0	2.57	0.00	12.21	1.33	11.18	4.10	0.77
82	ER24a	ExonRegion	0	1.99	0.47	3.19	0.20	4.93	1.95	0.95
83	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER25a	ExonRegion	0	0.14	0.06	0.42	0.41	4.44	0.15	0.00
85	E25a_E26a	KnownJunction	0	0.00	0.00	1.51	1.57	16.62	1.45	0.00
86	ER26a	ExonRegion	0	1.90	1.67	3.69	4.65	22.10	3.23	1.04
87	E26a_E27a	KnownJunction	0	1.03	0.00	2.46	0.00	5.28	0.00	0.00
88	ER27a	ExonRegion	0	18.50	8.68	22.71	12.02	14.33	31.04	10.50