Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAI1	Gene	0	48.04	130.57	55.00	112.82	2.22	87.26	63.42
2	353383	Transcript	0	35.36	99.43	39.05	71.53	1.68	72.27	44.77
3	395774	Transcript	0	0.02	0.30	0.35	0.06	0.57	0.12	0.03
4	315321	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	395776	Transcript	0	5.09	8.68	3.83	5.82	0.00	3.49	3.54
6	261641	Transcript	0	54.28	67.12	41.84	66.85	2.94	60.57	37.67
7	355970	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	3.55	26.49	3.76	22.73	0.00	12.31	3.30
9	E1a_E2a	KnownJunction	0	15.10	95.39	22.65	51.34	0.00	46.58	21.78
10	E1a_E4a	NovelJunction	1	0.00	32.63	0.83	8.13	0.00	9.11	1.78
11	ER2a	ExonRegion	0	26.49	145.34	37.54	87.95	0.15	89.21	35.52
12	E2a_E4a	KnownJunction	0	49.54	195.30	57.51	93.11	1.18	119.61	50.58
13	ER3a	ExonRegion	0	0.04	0.61	0.71	0.12	0.13	0.23	0.06
14	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.01	0.00	0.00
15	E4_Ab	NovelBoundary	0	40.86	211.04	51.07	96.25	0.92	118.19	50.22
16	ER4a	ExonRegion	0	55.92	245.62	68.58	118.90	1.62	139.11	62.66
17	ER4b	ExonRegion	0	47.01	193.29	64.26	152.67	2.91	132.56	84.36
18	E4_Da	KnownBoundary	0	91.21	223.75	102.06	219.36	3.85	168.81	124.70
19	ER4c	ExonRegion	0	74.79	186.81	79.74	171.23	3.61	121.11	92.97
20	E4b_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E4_Ad	KnownBoundary	0	65.96	139.53	61.76	123.43	1.18	105.38	74.98
22	ER4d	ExonRegion	0	61.71	151.11	60.76	125.75	2.74	96.95	72.86
23	ER4e	ExonRegion	0	58.55	137.04	59.88	130.93	1.62	97.34	67.59
24	ER4f	ExonRegion	0	51.89	152.49	56.91	132.41	3.12	93.76	73.68
25	E4_Dc	KnownBoundary	0	90.41	183.82	84.01	166.15	3.16	107.74	95.81
26	E4c_E4e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER4g	ExonRegion	0	84.93	187.94	105.50	181.88	4.35	101.44	103.32
28	E4_Ae	KnownBoundary	0	102.88	228.88	110.74	192.10	4.01	119.29	125.89
29	ER4h	ExonRegion	0	62.57	171.94	73.85	153.44	2.77	96.79	80.35
30	E4_Dd	KnownBoundary	1	16.06	86.93	27.39	53.67	0.00	50.73	38.24
31	E4_De	KnownBoundary	1	22.11	78.08	43.57	67.75	0.00	45.40	47.87
32	E4e_E9c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER4i	ExonRegion	0	56.86	221.10	94.16	147.14	0.81	116.47	103.89
34	ER4j	ExonRegion	0	51.52	144.32	62.95	126.51	2.12	92.22	71.79
35	E4_Df	KnownBoundary	1	44.35	184.27	87.33	118.77	1.06	111.51	100.69
36	E4f_E4f	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER4k	ExonRegion	0	46.55	131.76	60.83	107.35	1.88	87.13	67.29
38	E4_Af	KnownBoundary	0	48.07	127.15	64.58	126.76	2.10	106.31	75.01
39	ER4l	ExonRegion	0	61.25	165.84	75.20	150.21	3.05	134.75	84.51
40	E4_Dg	KnownBoundary	0	74.49	166.74	78.71	175.50	4.13	115.35	107.04
41	ER4m	ExonRegion	0	56.75	148.54	63.67	139.55	2.47	108.49	79.14
42	E4_Dh	KnownBoundary	0	33.20	104.93	44.88	86.72	2.24	69.52	62.13
43	E4h_E4g	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER4n	ExonRegion	0	38.17	110.07	41.65	103.37	3.09	67.98	59.28
45	E4_Ag	KnownBoundary	0	44.21	108.53	47.55	114.87	1.96	72.84	73.32
46	ER4o	ExonRegion	0	46.16	129.42	47.29	112.96	2.05	77.98	76.26
47	E4i_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E4i_E6a	KnownJunction	0	45.95	165.25	54.82	112.94	1.18	120.87	70.15
49	ER5a	ExonRegion	0	0.88	0.76	0.80	0.01	0.00	2.01	1.54
50	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER6a	ExonRegion	0	36.88	146.31	44.31	113.37	1.87	89.54	65.10
52	E6_Da	KnownBoundary	0	7.18	15.95	4.56	2.90	0.00	8.36	7.67
53	E6a_E8a	KnownJunction	0	47.22	105.09	54.89	102.89	5.09	71.13	70.37
54	ER6b	ExonRegion	0	6.16	14.83	6.06	4.36	0.44	6.82	9.37
55	E6_Db	KnownBoundary	0	13.07	10.09	6.48	7.26	0.00	6.57	8.63
56	ER6c	ExonRegion	0	5.09	8.68	3.83	5.82	0.00	3.49	3.54
57	E6_Dc	NovelBoundary	0	13.64	10.77	7.67	6.23	1.08	5.33	11.79
58	E7a_E9b	KnownJunction	0	108.55	134.25	83.68	133.69	5.88	121.13	75.34
59	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER8a	ExonRegion	0	44.69	94.64	49.16	85.02	4.81	80.82	76.13
61	E8a_E9a	KnownJunction	0	42.23	67.41	41.08	66.18	1.08	60.41	55.26
62	ER9a	ExonRegion	0	45.46	84.32	41.30	67.49	1.60	64.10	39.71
63	E9_Ab	KnownBoundary	0	100.61	113.39	78.06	112.83	5.88	96.99	64.81
64	ER9b	ExonRegion	0	81.92	132.69	73.81	125.61	4.05	132.54	84.73
65	E9_Da	KnownBoundary	0	93.41	139.29	95.40	120.53	3.25	154.13	98.89
66	ER9c	ExonRegion	0	61.80	95.15	48.25	78.81	3.09	100.61	62.20
67	E9_Ac	KnownBoundary	0	38.67	38.44	34.12	35.60	1.11	62.15	21.27
68	ER9d	ExonRegion	1	12.02	21.82	14.85	32.51	0.42	43.26	10.18
69	E9_Db	KnownBoundary	1	8.85	24.83	18.60	44.24	0.00	51.16	8.87
70	ER9e	ExonRegion	1	6.93	19.30	18.63	18.37	0.25	29.39	7.47
71	IG3	Intergenic	0	2.32	7.55	3.82	18.86	4.67	12.40	35.18
72	IG3_AR1	ActiveIntergenicRegion	0	2.33	7.59	3.84	18.98	4.70	12.47	35.35