Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRAF4	Gene	0	361.15	1073.62	272.48	624.07	237.39	438.42	301.43
2	262395	Transcript	0	419.19	1372.25	320.59	795.09	337.49	522.72	425.48
3	262396	Transcript	0	0	0	0	0	0	0	0
4	394925	Transcript	0	0.00	0.00	0.00	1.44	0.00	0.00	0.00
5	394924	Transcript	0	299.57	0.00	199.95	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.45	4.86	0.12	4.84	0.52	3.89	1.79
7	ER1b	ExonRegion	0	62.15	180.16	30.19	139.99	43.78	94.48	51.63
8	E1_Ac	KnownBoundary	0	100.19	264.16	50.51	199.09	10.47	127.92	79.70
9	ER1c	ExonRegion	0	98.57	616.11	99.50	397.22	72.06	290.85	126.64
10	E1_Da	NovelBoundary	0	155.25	639.97	138.37	436.09	99.63	313.26	167.68
11	E1a_E7b	KnownJunction	0	299.57	0.00	199.95	0.00	0.00	0.00	0.00
12	E1b_E2a	KnownJunction	0	331.23	1278.89	331.45	932.29	400.75	660.64	397.77
13	ER1d	ExonRegion	0	316.04	1379.30	332.72	955.74	331.97	721.22	419.90
14	I1	Intron	1	118.74	117.97	45.88	25.98	13.53	14.41	18.50
15	I1_AR1	ActiveIntronRegion	1	104.34	141.68	52.48	26.22	12.44	21.10	15.26
16	I1_SR2	SilentIntronRegion	0	80.50	123.74	36.82	28.42	8.56	18.08	15.14
17	I1_AR3	ActiveIntronRegion	1	156.39	126.46	56.17	28.96	17.10	12.54	24.71
18	I1_SR4	SilentIntronRegion	0	205.02	168.38	73.63	33.04	19.11	20.11	36.29
19	I1_AR4	ActiveIntronRegion	1	109.53	96.13	34.31	23.01	14.06	11.68	15.23
20	E2_Aa	NovelBoundary	1	242.76	111.65	142.63	15.09	21.49	16.40	24.22
21	ER2a	ExonRegion	0	507.23	1704.30	472.49	1109.29	389.63	888.80	529.27
22	E2_Da	NovelBoundary	1	120.58	110.45	67.33	65.99	12.52	42.61	23.39
23	E2a_E3a	KnownJunction	0	587.74	1736.36	499.64	1022.63	304.80	909.69	525.62
24	E2a_E7c	KnownJunction	0	0.00	0.00	0.00	1.44	0.00	0.00	0.00
25	I2	Intron	1	185.02	142.76	95.28	73.95	20.44	54.68	23.51
26	I2_AR1	ActiveIntronRegion	1	185.63	143.23	95.60	74.19	20.50	54.86	23.59
27	E3_Aa	NovelBoundary	1	260.65	233.29	123.81	101.51	31.33	59.98	42.94
28	ER3a	ExonRegion	0	559.76	2125.35	484.68	1206.62	325.85	923.32	479.47
29	E3_Da	NovelBoundary	0	104.58	147.28	41.04	85.55	18.97	65.18	46.23
30	E3a_E4a	KnownJunction	0	674.52	2169.13	638.13	1374.58	334.06	1128.51	626.90
31	E4_Aa	NovelBoundary	0	121.82	158.34	51.73	107.85	26.19	58.88	54.29
32	ER4a	ExonRegion	0	585.21	2082.06	491.08	1231.46	374.54	928.16	474.51
33	E4a_E5a	KnownJunction	0	722.79	2003.83	657.39	1138.86	611.50	851.94	608.07
34	ER5a	ExonRegion	0	731.42	1986.90	667.00	1149.49	570.95	848.80	585.43
35	ER5b	ExonRegion	0	565.27	1756.36	437.01	972.75	422.47	692.63	453.71
36	E5b_E6a	KnownJunction	0	648.65	1916.76	463.24	1064.11	454.69	729.92	590.23
37	E6_Aa	NovelBoundary	1	295.95	123.16	206.01	63.72	11.83	69.28	20.22
38	ER6a	ExonRegion	0	603.90	1962.44	440.31	1098.85	444.46	740.86	591.15
39	E6_Da	NovelBoundary	1	195.92	349.31	87.72	85.77	105.31	76.33	110.87
40	E6a_E7a	KnownJunction	0	428.18	1552.20	356.73	973.52	452.18	579.92	563.77
41	I6	Intron	1	112.32	257.17	46.89	74.77	47.76	63.00	70.67
42	I6_AR1	ActiveIntronRegion	1	113.05	258.87	47.20	75.27	48.07	63.38	71.12
43	E7_Aa	NovelBoundary	0	160.76	318.23	77.05	192.75	58.07	188.78	77.52
44	ER7a	ExonRegion	0	557.01	2111.46	452.34	1289.58	531.29	802.54	694.34
45	E7_Ab	KnownBoundary	0	813.15	2387.65	582.70	1500.55	498.10	901.68	785.49
46	ER7b	ExonRegion	0	851.88	2209.31	610.54	1333.57	612.81	917.26	697.44
47	E7_Ac	KnownBoundary	0	992.22	2015.39	631.68	1346.05	693.41	929.28	621.11
48	ER7c	ExonRegion	0	947.98	1818.89	579.50	1112.43	493.78	839.59	481.46
49	E7_Ad	KnownBoundary	0	908.77	1772.35	577.66	993.40	401.44	805.84	457.59
50	ER7d	ExonRegion	0	715.31	1688.43	492.85	919.36	328.79	716.51	485.44
51	E7_Da	KnownBoundary	0	573.75	1197.22	333.49	624.12	276.93	478.56	193.69
52	ER7e	ExonRegion	0	532.02	1070.69	319.78	535.75	296.62	391.24	237.27
53	E7_Db	KnownBoundary	0	485.19	1014.08	324.90	525.78	257.62	410.09	348.40
54	ER7f	ExonRegion	0	130.89	301.70	94.38	161.96	56.77	109.25	83.41
55	IG44	Intergenic	0	50.50	64.69	57.21	30.27	177.80	28.90	58.59
56	IG44_SR2	SilentIntergenicRegion	0	18.57	11.09	7.19	7.00	1.86	5.23	3.72
57	IG44_SR3	SilentIntergenicRegion	0	14.08	16.36	4.92	11.23	1.32	6.38	1.40
58	IG44_AR3	ActiveIntergenicRegion	0	65.89	88.98	80.40	40.71	258.21	39.74	83.93