Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CNTROB	Gene	0	49.50	38.81	59.99	72.65	52.42	41.30	45.00
2	380262	Transcript	0	2.38	4.02	3.94	6.97	3.29	10.52	1.18
3	380255	Transcript	0	2.75	0.00	3.12	0.00	4.10	0.99	1.61
4	303707	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	2.65	1.51	2.67	3.13	6.04	0.09	2.03
6	E1_Ab	KnownBoundary	0	8.06	4.81	6.60	5.96	18.81	0.99	7.38
7	ER1b	ExonRegion	0	51.41	36.77	65.97	69.55	44.33	34.70	42.54
8	E1a_E2a	KnownJunction	0	119.80	62.32	161.47	110.61	103.88	70.97	82.82
9	ER2a	ExonRegion	0	113.59	58.68	148.05	100.09	90.96	67.70	87.05
10	E2a_E3a	KnownJunction	0	95.40	51.78	115.37	77.64	68.77	80.45	72.33
11	ER3a	ExonRegion	0	94.39	50.30	105.58	101.64	86.42	68.12	65.67
12	E3a_E4a	KnownJunction	0	91.04	41.48	105.39	92.62	82.21	35.13	52.83
13	I3	Intron	0	15.88	4.50	8.89	2.64	9.90	0.00	5.52
14	I3_SR1	SilentIntronRegion	0	16.99	4.82	9.52	2.83	10.61	0.00	5.91
15	E4_Aa	NovelBoundary	1	44.90	4.23	55.81	5.91	25.96	1.66	5.93
16	ER4a	ExonRegion	0	76.04	41.28	81.83	83.26	73.44	40.12	56.10
17	E4a_E5a	KnownJunction	0	55.61	21.36	59.22	44.19	70.89	18.25	49.84
18	E5_Aa	NovelBoundary	0	14.54	11.45	14.23	26.50	9.94	14.47	8.80
19	ER5a	ExonRegion	0	67.91	37.56	73.88	73.04	66.33	27.03	53.51
20	E5a_E6a	KnownJunction	0	68.68	52.23	73.43	82.30	71.44	49.26	49.30
21	ER6a	ExonRegion	0	70.63	46.56	74.29	78.88	71.88	40.87	59.75
22	E6a_E7a	KnownJunction	0	64.84	47.42	65.44	86.23	86.45	36.93	52.73
23	ER7a	ExonRegion	0	63.80	44.97	75.16	101.57	68.37	45.65	56.59
24	E7a_E8a	KnownJunction	0	50.29	41.22	73.04	96.88	70.01	41.30	63.96
25	ER8a	ExonRegion	0	36.53	35.47	52.08	62.87	49.00	35.19	45.59
26	E8a_E9a	KnownJunction	0	36.68	16.05	39.25	49.66	48.00	33.71	38.14
27	ER9a	ExonRegion	0	26.33	24.28	39.00	50.31	36.65	37.01	32.37
28	E9_Da	NovelBoundary	1	15.45	1.13	10.61	4.55	3.11	0.00	2.49
29	E9a_E10a	KnownJunction	1	38.89	15.11	39.71	42.89	58.16	59.12	37.92
30	ER10a	ExonRegion	0	23.44	31.00	36.23	48.79	46.58	36.87	43.27
31	E10a_E11a	KnownJunction	0	33.28	31.34	44.92	54.67	64.39	40.33	54.57
32	ER11a	ExonRegion	0	43.11	46.08	54.56	67.99	61.45	42.16	61.37
33	E11_Da	NovelBoundary	0	9.40	14.90	17.92	14.58	5.37	8.31	8.04
34	E11a_E12a	KnownJunction	0	30.73	36.36	33.64	52.42	55.86	34.49	39.64
35	E11a_E13a	KnownJunction	0	2.75	0.00	3.12	0.00	4.10	0.99	1.61
36	I11	Intron	0	11.86	10.96	13.11	15.00	8.17	13.51	6.78
37	I11_AR1	ActiveIntronRegion	0	11.95	11.04	13.23	15.14	8.25	13.63	6.84
38	E12_Aa	NovelBoundary	1	20.06	7.25	17.32	17.18	1.96	10.48	3.25
39	ER12a	ExonRegion	0	44.41	40.54	44.07	67.39	65.32	33.24	47.21
40	E12a_E13a	KnownJunction	0	36.68	38.07	40.41	58.27	30.94	33.63	37.10
41	ER13a	ExonRegion	0	51.08	46.97	59.67	88.82	51.82	61.67	45.08
42	E13a_E14a	KnownJunction	0	60.20	48.55	84.61	87.12	51.85	51.43	55.45
43	ER14a	ExonRegion	0	53.16	55.84	69.82	97.91	61.34	62.93	59.36
44	E14a_E15a	KnownJunction	0	78.33	64.97	97.50	133.45	77.73	69.49	71.56
45	ER15a	ExonRegion	0	76.54	68.32	90.53	141.08	100.38	69.15	75.67
46	E15a_E16a	KnownJunction	0	61.19	60.56	80.86	143.53	76.81	74.88	75.48
47	ER16a	ExonRegion	0	51.72	53.90	57.86	113.20	76.32	58.89	57.16
48	E16a_E17a	KnownJunction	0	58.70	46.37	58.34	89.59	105.61	66.09	42.64
49	ER17a	ExonRegion	0	53.20	43.94	59.78	91.13	53.66	58.47	39.81
50	E17_Da	KnownBoundary	1	8.96	11.01	10.48	23.22	4.24	33.10	3.34
51	E17a_E18a	KnownJunction	0	22.13	29.27	23.22	46.38	11.80	29.51	27.95
52	ER17b	ExonRegion	1	3.45	7.69	7.15	13.53	3.82	20.90	1.51
53	E17_Db	NovelBoundary	0	9.25	4.99	13.05	19.99	2.10	9.86	9.27
54	E17b_E18a	KnownJunction	0	1.03	2.84	2.00	4.25	0.00	10.56	0.00
55	I17	Intron	0	7.75	5.30	11.60	11.38	1.95	11.66	4.99
56	I17_AR1	ActiveIntronRegion	0	7.79	5.32	11.66	11.44	1.95	11.71	5.02
57	E18_Aa	NovelBoundary	0	6.43	10.96	10.19	12.49	2.90	15.65	3.40
58	ER18a	ExonRegion	0	22.43	31.67	28.40	53.91	29.88	45.36	18.81
59	E18_Da	NovelBoundary	0	9.91	4.07	8.10	18.18	0.00	11.28	2.69
60	E18a_E19a	KnownJunction	0	37.74	34.18	41.29	55.02	57.63	57.73	28.51
61	I18	Intron	0	8.02	9.69	7.75	8.73	2.53	13.09	5.86
62	I18_AR1	ActiveIntronRegion	0	8.09	9.77	7.82	8.79	2.55	13.21	5.91
63	E19_Aa	NovelBoundary	0	17.89	13.74	29.53	19.59	0.88	15.81	12.91
64	ER19a	ExonRegion	0	21.66	17.22	17.35	29.92	22.97	23.11	11.02
65	ER19b	ExonRegion	0	1.54	0.00	1.35	3.74	1.62	0.00	0.67