Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DPH1	Gene	0	51.09	80.07	89.02	160.93	35.15	73.00	74.44
2	263083	Transcript	0	79.59	114.23	133.80	227.88	51.33	96.88	111.70
3	IG34_SR12	SilentIntergenicRegion	0	3.11	1.20	0.21	1.95	0.05	7.88	0.18
4	ER1a	ExonRegion	0	31.54	30.05	49.23	78.12	39.90	29.48	39.74
5	E1a_E2a	KnownJunction	0	44.08	46.61	57.18	121.21	10.35	51.83	53.30
6	I1_AR1	ActiveIntronRegion	1	1.54	7.11	3.35	4.99	0.00	24.40	2.02
7	I1_AR2	ActiveIntronRegion	1	0.96	7.14	3.09	4.99	0.00	24.52	1.81
8	I1_AR3	ActiveIntronRegion	1	0.05	8.37	2.73	3.38	0.55	21.45	1.47
9	E2_Aa	NovelBoundary	1	2.72	4.26	0.65	1.68	0.00	25.65	1.71
10	ER2a	ExonRegion	0	44.83	86.22	82.77	159.11	19.83	98.66	59.54
11	E2a_E3a	KnownJunction	0	145.97	138.21	260.58	284.84	84.28	140.78	159.80
12	E3_Aa	NovelBoundary	1	2.75	1.63	1.60	3.36	0.92	21.39	2.18
13	ER3a	ExonRegion	0	126.10	173.04	222.45	318.44	107.74	129.80	170.47
14	E3a_E4a	KnownJunction	0	117.81	188.39	175.56	340.35	82.74	138.21	174.38
15	ER4a	ExonRegion	0	88.43	208.12	161.94	361.76	64.38	146.58	177.72
16	E4_Da	NovelBoundary	1	16.22	29.63	18.28	46.49	0.00	34.22	3.37
17	E4a_E5a	KnownJunction	0	105.73	177.31	210.70	319.65	65.10	107.68	187.05
18	I4	Intron	0	7.13	17.30	10.01	25.26	0.94	25.92	3.74
19	I4_AR1	ActiveIntronRegion	0	7.16	17.37	10.05	25.37	0.94	26.02	3.76
20	E5_Aa	NovelBoundary	0	4.24	31.53	9.27	32.67	2.05	30.39	4.37
21	ER5a	ExonRegion	0	123.55	198.51	244.06	403.68	85.33	148.97	226.71
22	E5a_E6a	KnownJunction	0	90.68	140.63	157.50	286.43	47.14	126.07	148.20
23	ER6a	ExonRegion	0	100.15	152.82	193.90	323.66	70.20	130.29	154.94
24	E6_Da	NovelBoundary	0	14.54	19.10	21.90	22.97	6.85	8.63	5.32
25	E6a_E7a	KnownJunction	0	93.13	145.46	162.51	293.21	47.95	111.43	155.38
26	E6a_E8a	NovelJunction	1	1.87	2.89	1.09	22.38	0.00	12.46	0.63
27	I6	Intron	0	7.93	13.04	12.39	14.46	4.82	25.36	4.22
28	I6_AR2	ActiveIntronRegion	1	2.69	4.86	7.90	3.33	1.62	17.16	2.70
29	I6_AR3	ActiveIntronRegion	1	6.23	7.57	14.64	12.60	5.63	20.28	4.39
30	I6_AR4	ActiveIntronRegion	1	6.92	8.50	15.72	14.96	8.02	20.84	5.40
31	I6_AR5	ActiveIntronRegion	1	5.67	6.23	12.87	14.96	5.92	16.55	4.60
32	I6_SR1	SilentIntronRegion	0	8.55	14.41	13.17	15.68	4.99	27.63	4.51
33	E7_Aa	NovelBoundary	0	17.66	21.10	10.72	30.37	7.19	21.55	15.59
34	ER7a	ExonRegion	0	117.29	142.65	202.34	311.83	104.38	115.23	173.00
35	E7_Da	NovelBoundary	1	49.42	6.59	82.37	14.17	0.85	29.48	1.46
36	E7a_E8a	KnownJunction	0	123.66	137.06	191.33	290.17	62.40	86.78	146.19
37	I7	Intron	1	2.72	3.27	3.89	9.35	0.10	18.83	0.78
38	I7_SR1	SilentIntronRegion	1	2.73	3.29	3.91	9.39	0.11	18.92	0.78
39	ER8a	ExonRegion	0	103.58	131.56	162.49	288.04	62.56	128.24	109.04
40	E8_Da	NovelBoundary	0	3.54	14.82	7.98	11.24	1.18	28.54	3.08
41	E8a_E9a	KnownJunction	0	118.97	120.85	167.43	259.42	63.90	104.20	108.37
42	I8	Intron	1	5.53	12.03	3.04	3.64	2.83	16.35	4.34
43	I8_AR1	ActiveIntronRegion	1	5.61	12.19	3.09	3.70	2.87	16.56	4.41
44	E9_Aa	NovelBoundary	0	5.39	15.45	7.13	16.53	6.09	21.87	4.34
45	ER9a	ExonRegion	0	101.13	133.20	157.88	257.99	54.25	114.30	113.21
46	E9_Da	NovelBoundary	1	1.92	11.56	8.64	19.21	0.00	27.26	1.49
47	E9a_E10a	KnownJunction	0	71.58	104.82	124.68	180.62	51.59	78.50	102.63
48	I9	Intron	1	6.57	8.90	6.86	10.08	1.34	27.71	0.99
49	I9_AR1	ActiveIntronRegion	1	6.61	8.96	6.90	10.13	1.35	27.83	1.00
50	E10_Aa	NovelBoundary	1	24.23	37.73	13.39	51.23	2.01	154.77	3.88
51	ER10a	ExonRegion	0	50.69	93.59	84.84	196.63	41.85	109.10	77.09
52	E10_Da	NovelBoundary	1	30.59	45.63	20.88	52.12	2.95	221.88	6.92
53	E10a_E11a	KnownJunction	0	48.97	65.44	67.54	161.22	33.68	67.03	71.17
54	E11_Aa	NovelBoundary	1	82.78	48.65	39.58	45.00	4.86	74.91	4.53
55	ER11a	ExonRegion	0	43.71	65.77	51.29	146.53	23.32	92.80	48.22
56	E11_Da	NovelBoundary	1	12.80	29.24	11.37	31.91	0.00	64.53	0.69
57	E11a_E12a	KnownJunction	0	22.90	43.66	35.57	95.60	13.09	33.53	37.62
58	I11	Intron	1	4.92	18.72	5.76	19.38	0.00	57.03	1.04
59	I11_AR1	ActiveIntronRegion	1	4.99	18.97	5.83	19.62	0.00	57.77	1.05
60	E12_Aa	NovelBoundary	1	29.72	36.94	23.38	50.77	1.18	98.89	3.24
61	ER12a	ExonRegion	0	28.62	65.50	44.66	114.86	18.07	85.75	37.20
62	E12_Da	NovelBoundary	1	37.84	50.13	28.24	73.63	3.27	122.02	1.38
63	E12a_E13a	KnownJunction	0	41.93	59.66	67.35	88.97	26.21	39.42	54.57
64	I12	Intron	1	14.26	24.05	10.17	25.55	1.16	56.69	1.85
65	I12_AR1	ActiveIntronRegion	1	14.51	24.48	10.34	25.98	1.18	57.61	1.88
66	Ix	Intron	1	37.52	31.05	23.80	36.27	3.40	80.35	6.70
67	Ix_AR1	ActiveIntronRegion	0	37.70	31.18	23.92	36.45	3.42	80.75	6.73
68	ER13a	ExonRegion	0	4.65	6.64	9.23	14.80	3.00	7.37	6.97