Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AP1G1	Gene	0	306.48	369.85	228.79	323.02	196.57	338.69	237.38
2	393512	Transcript	0	7.58	6.63	13.12	12.29	1.11	3.08	7.46
3	299980	Transcript	0	268.14	385.24	155.31	244.50	114.78	239.43	165.17
4	IG20	Intergenic	0	29.74	44.83	35.49	42.93	17.76	33.22	28.86
5	IG20_AR9	ActiveIntergenicRegion	0	95.13	138.75	123.39	136.09	69.80	102.84	85.24
6	IG20_SR8	SilentIntergenicRegion	0	48.78	134.06	67.56	129.72	31.63	77.80	69.68
7	IG20_AR8	ActiveIntergenicRegion	0	55.92	158.23	84.38	134.96	29.62	96.74	75.64
8	IG20_SR7	SilentIntergenicRegion	0	6.76	7.91	6.24	6.81	1.22	5.06	2.88
9	IG20_AR7	ActiveIntergenicRegion	0	8.30	8.43	8.98	6.25	1.23	8.72	5.50
10	IG20_SR6	SilentIntergenicRegion	0	9.65	7.60	6.45	3.58	0.75	5.39	8.16
11	IG20_AR5	ActiveIntergenicRegion	0	18.48	7.86	8.17	10.71	0.39	17.63	19.11
12	IG20_AR3	ActiveIntergenicRegion	0	14.24	11.50	10.51	11.55	0.33	10.39	12.32
13	IG20_AR2	ActiveIntergenicRegion	0	20.64	3.64	14.23	7.30	0.81	7.18	10.99
14	IG20_AR1	ActiveIntergenicRegion	0	5.56	7.29	1.23	6.77	0.33	17.55	3.64
15	ER1a	ExonRegion	1	174.13	114.58	70.03	101.82	58.77	187.75	48.94
16	E1a_E2a	KnownJunction	0	88.37	158.55	75.50	149.19	88.15	196.07	108.35
17	ER2a	ExonRegion	0	153.25	393.13	154.88	316.28	87.12	352.77	160.22
18	E2a_E3a	KnownJunction	0	154.33	496.98	157.01	396.29	124.35	366.46	205.83
19	ER3a	ExonRegion	0	180.90	507.19	188.05	430.83	143.51	404.57	230.77
20	E3a_E4a	KnownJunction	0	235.75	542.03	222.75	484.71	133.36	450.69	254.76
21	ER4a	ExonRegion	0	167.12	521.77	184.06	389.62	124.12	354.80	235.99
22	E4a_E5a	KnownJunction	0	201.41	532.05	193.57	400.24	109.06	406.34	280.82
23	ER5a	ExonRegion	0	202.41	498.22	212.65	351.23	139.76	329.50	234.49
24	E5a_E6a	KnownJunction	0	198.73	412.17	212.06	289.28	126.35	305.28	177.19
25	ER6a	ExonRegion	0	266.23	456.55	194.51	313.36	144.19	297.58	194.54
26	E6a_E7a	KnownJunction	0	7.06	8.14	17.57	11.65	0.00	1.66	9.60
27	E6a_E8a	KnownJunction	0	268.14	385.24	155.31	244.50	114.78	239.43	165.17
28	E6a_E9a	NovelJunction	0	7.06	8.91	2.69	7.29	0.00	11.12	0.00
29	E7a_E8a	KnownJunction	1	11.15	6.36	17.65	19.97	0.00	4.85	8.74
30	ER7a	ExonRegion	0	4.53	5.40	4.14	5.26	3.33	2.72	4.05
31	ER8a	ExonRegion	0	469.35	536.99	346.37	413.71	224.60	361.01	282.34
32	E8a_E9a	KnownJunction	0	565.96	519.62	420.94	438.98	182.03	344.56	252.26
33	ER9a	ExonRegion	0	521.39	497.73	421.45	429.65	225.00	364.65	300.88
34	E9a_E10a	KnownJunction	0	466.15	414.35	388.79	381.01	228.50	308.38	296.35
35	ER10a	ExonRegion	0	412.73	383.88	346.39	328.78	229.21	283.13	267.42
36	E10a_E11a	KnownJunction	0	290.84	385.80	287.29	313.39	205.24	275.82	247.06
37	E10a_E12a	NovelJunction	0	3.05	1.10	2.40	11.51	0.00	2.73	0.00
38	ER11a	ExonRegion	0	286.01	390.01	315.00	332.34	171.57	273.00	256.06
39	E11a_E12a	KnownJunction	0	250.77	366.70	288.51	333.17	161.19	285.23	228.10
40	ER12a	ExonRegion	0	329.50	430.90	328.23	373.91	205.46	310.82	285.16
41	E12a_E13a	KnownJunction	0	398.84	420.87	352.76	335.79	192.01	284.08	282.72
42	E12a_E14a	NovelJunction	0	14.40	27.19	6.19	15.20	2.21	26.40	0.77
43	ER13a	ExonRegion	0	415.18	500.68	407.93	391.37	258.46	331.56	325.35
44	E13a_E14a	KnownJunction	0	345.88	483.26	341.81	368.52	244.29	296.03	306.09
45	ER14a	ExonRegion	0	415.77	479.29	387.46	399.28	265.37	327.45	330.11
46	E14a_E15a	KnownJunction	0	400.17	445.12	339.59	379.84	247.38	326.61	317.27
47	ER15a	ExonRegion	0	359.93	549.85	354.36	454.01	247.98	379.76	346.84
48	E15a_E16a	KnownJunction	0	356.75	524.33	360.41	456.95	257.59	390.50	333.58
49	ER16a	ExonRegion	0	337.37	518.85	317.85	477.36	251.33	400.03	353.93
50	E16a_E17a	KnownJunction	0	288.84	491.43	270.55	461.01	264.99	351.45	348.76
51	E16a_E18a	NovelJunction	0	8.13	20.81	14.27	23.08	0.00	17.07	6.74
52	E17_Aa	NovelBoundary	1	115.01	6.23	110.68	0.00	0.92	0.00	2.05
53	ER17a	ExonRegion	0	325.78	507.80	325.27	488.30	271.15	458.43	372.80
54	E17a_E18a	KnownJunction	0	289.37	510.77	294.38	472.79	246.60	559.07	393.41
55	ER18a	ExonRegion	0	377.07	596.45	373.85	536.74	274.65	583.39	436.53
56	E18a_E19a	KnownJunction	0	460.46	585.54	377.55	492.33	306.69	536.05	353.86
57	ER19a	ExonRegion	0	501.38	569.59	389.75	526.41	300.00	559.37	415.90
58	E19a_E20a	KnownJunction	0	554.16	528.27	408.18	560.03	211.05	611.52	395.06
59	ER20a	ExonRegion	0	484.98	542.01	364.21	490.57	280.93	535.43	385.84
60	E20a_E21a	KnownJunction	0	521.91	502.34	380.08	520.18	356.67	523.19	403.11
61	ER21a	ExonRegion	0	297.64	492.04	245.04	445.07	224.71	433.30	319.44
62	E21a_E22a	KnownJunction	0	255.46	536.78	236.15	443.75	187.07	450.53	297.76
63	ER22a	ExonRegion	0	267.39	590.68	262.43	492.06	238.14	505.10	353.78
64	E22a_E23a	KnownJunction	0	259.14	574.92	244.43	461.39	222.11	460.80	360.44
65	ER23a	ExonRegion	0	236.45	598.45	251.71	453.98	194.82	510.11	361.90
66	E23a_E24a	KnownJunction	0	217.12	546.71	216.53	456.05	165.20	506.60	327.43
67	ER24a	ExonRegion	0	306.97	312.42	203.05	282.85	198.75	311.88	212.92