Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATP2C2	Gene	0	30.45	8.33	11.35	0.45	5.97	0.50	48.28
2	262429	Transcript	0	29.66	6.96	11.81	0.35	6.16	0.34	50.56
3	ER1a	ExonRegion	0	10.89	0.86	2.43	0.00	2.44	0.12	10.06
4	E1a_E2a	KnownJunction	0	23.92	3.94	8.82	0.00	4.20	1.34	23.07
5	ER2a	ExonRegion	0	35.09	5.71	14.70	0.00	4.38	1.15	42.32
6	E2a_E3a	KnownJunction	0	27.96	5.65	8.41	0.00	7.19	1.61	39.02
7	ER3a	ExonRegion	0	29.65	2.77	13.94	0.81	6.22	1.10	48.86
8	E3a_E4a	KnownJunction	0	34.55	2.26	20.31	0.00	9.08	0.00	59.32
9	E4_Aa	NovelBoundary	1	13.35	0.00	6.05	0.00	0.00	0.00	0.00
10	ER4a	ExonRegion	0	36.00	5.68	12.70	1.95	5.22	0.91	54.92
11	E4a_E5a	KnownJunction	0	17.01	3.10	5.23	1.00	8.37	1.07	48.66
12	ER5a	ExonRegion	0	23.35	2.94	8.17	0.38	8.35	0.31	58.30
13	E5a_E6a	KnownJunction	0	21.08	1.05	9.17	0.00	5.16	0.00	45.77
14	E6_Aa	NovelBoundary	1	13.94	2.36	4.53	0.00	0.00	0.00	0.87
15	ER6a	ExonRegion	0	28.36	5.66	12.90	0.00	6.61	0.91	56.89
16	E6a_E7a	KnownJunction	0	30.68	6.28	13.28	0.00	5.74	1.63	48.27
17	E7_Aa	NovelBoundary	1	12.52	1.52	3.87	0.00	0.00	2.79	0.85
18	ER7a	ExonRegion	0	27.33	5.72	12.57	0.87	7.10	0.65	47.25
19	E7a_E8a	KnownJunction	0	22.78	4.15	6.62	0.00	6.45	1.58	36.83
20	ER8a	ExonRegion	0	25.48	6.81	10.60	0.63	5.81	0.39	42.15
21	E8a_E9a	KnownJunction	0	20.36	7.70	12.79	0.00	6.13	0.00	37.62
22	ER9a	ExonRegion	0	28.87	11.51	11.37	0.00	6.21	0.00	49.39
23	E9a_E10a	KnownJunction	0	28.81	10.35	13.28	0.00	5.30	0.00	62.60
24	ER10a	ExonRegion	0	35.89	9.24	14.58	0.82	8.92	0.00	59.26
25	E10a_E11a	KnownJunction	0	29.93	8.56	15.10	1.46	9.68	0.00	68.10
26	ER11a	ExonRegion	0	23.19	8.85	14.55	0.43	5.80	0.00	62.77
27	E11a_E12a	KnownJunction	0	25.55	10.51	11.83	0.00	6.02	0.00	58.60
28	ER12a	ExonRegion	0	37.11	11.15	11.63	0.00	8.08	0.00	61.41
29	E12a_E13a	KnownJunction	0	51.19	10.11	16.50	0.00	8.35	0.00	68.42
30	ER13a	ExonRegion	0	40.02	11.75	18.69	0.00	6.25	0.00	74.34
31	E13a_E14a	KnownJunction	0	38.65	4.07	10.04	0.00	6.20	0.00	65.38
32	ER14a	ExonRegion	0	40.27	9.05	9.99	0.00	9.20	0.00	59.42
33	E14a_E15a	KnownJunction	0	33.65	2.92	12.63	0.00	6.04	0.00	37.61
34	ER15a	ExonRegion	0	32.40	5.52	14.16	0.00	7.17	0.00	45.01
35	E15a_E16a	KnownJunction	0	40.72	5.31	14.96	0.00	6.25	0.00	47.35
36	ER16a	ExonRegion	0	36.40	10.55	10.52	0.66	6.69	0.00	54.87
37	E16a_E17a	KnownJunction	0	31.41	11.09	15.65	1.44	8.60	0.00	67.23
38	E17_Aa	NovelBoundary	0	9.78	2.08	2.87	2.14	0.00	0.00	15.02
39	ER17a	ExonRegion	0	30.36	9.03	7.88	0.78	6.96	2.37	46.07
40	E17_Da	NovelBoundary	0	10.88	4.52	1.84	1.68	2.35	0.00	12.08
41	E17a_E18a	KnownJunction	0	29.26	4.99	9.14	0.00	3.09	0.00	45.32
42	I17_AR1	ActiveIntronRegion	0	8.44	2.47	3.23	0.46	2.27	0.00	9.66
43	I17_AR2	ActiveIntronRegion	0	10.69	3.10	2.83	0.76	1.23	0.00	11.98
44	ER18a	ExonRegion	0	21.40	6.68	6.93	0.55	4.09	0.00	44.87
45	E18a_E19a	KnownJunction	0	14.20	6.83	4.68	0.00	5.42	0.00	29.22
46	ER19a	ExonRegion	0	18.00	8.33	7.96	0.97	4.14	0.00	42.97
47	E19a_E20a	KnownJunction	0	24.73	9.20	11.75	0.00	5.19	0.00	38.57
48	ER20a	ExonRegion	0	23.51	9.65	10.77	0.00	8.05	0.00	43.03
49	E20a_E21a	KnownJunction	0	20.06	6.99	10.91	0.00	7.52	0.00	39.02
50	ER21a	ExonRegion	0	30.46	10.60	12.47	0.00	6.44	0.56	57.14
51	E21_Da	NovelBoundary	0	10.83	2.26	1.78	0.00	0.00	2.92	8.07
52	E21a_E22a	KnownJunction	0	20.50	8.62	13.16	0.00	4.15	0.00	56.09
53	I21	Intron	0	14.69	3.80	2.91	1.19	0.64	1.03	9.91
54	I21_SR1	SilentIntronRegion	0	13.52	3.04	2.67	0.88	0.82	0.98	5.67
55	I21_AR2	ActiveIntronRegion	0	16.22	4.78	3.24	1.59	0.41	1.10	15.35
56	E22_Aa	NovelBoundary	1	26.69	4.89	3.03	1.65	0.88	6.51	26.76
57	ER22a	ExonRegion	0	32.09	4.07	12.90	0.00	9.64	0.00	64.86
58	E22_Da	NovelBoundary	1	29.04	4.70	1.45	1.60	1.13	0.00	27.40
59	E22a_E23a	KnownJunction	0	36.00	2.36	12.89	0.00	9.43	0.00	84.78
60	E23_Aa	NovelBoundary	1	21.26	5.57	2.73	0.00	2.35	1.66	25.44
61	ER23a	ExonRegion	0	41.73	5.95	12.91	0.01	7.75	1.59	77.51
62	E23_Da	NovelBoundary	0	24.37	3.89	4.17	1.49	2.77	1.21	19.15
63	E23a_E24a	KnownJunction	1	18.81	3.21	5.52	0.00	2.19	0.00	54.04
64	I23	Intron	1	23.38	6.97	2.63	0.69	1.53	1.93	20.22
65	I23_AR1	ActiveIntronRegion	0	19.72	3.41	3.02	0.44	2.46	1.73	15.17
66	I23_SR1	SilentIntronRegion	1	24.53	8.02	2.53	0.76	1.26	2.00	21.75
67	E24_Aa	NovelBoundary	1	24.28	12.61	2.28	2.90	2.14	1.55	33.65
68	ER24a	ExonRegion	0	41.12	10.91	11.25	1.25	6.37	0.00	73.83
69	E24_Da	NovelBoundary	1	18.01	6.12	1.62	2.22	0.00	1.63	23.88
70	E24a_E25a	KnownJunction	0	22.20	7.22	12.89	0.00	5.51	0.00	50.73
71	I24	Intron	0	6.91	4.04	1.63	0.52	0.72	0.41	9.72
72	I24_SR1	SilentIntronRegion	1	6.93	4.05	1.63	0.52	0.72	0.41	9.74
73	E25_Aa	NovelBoundary	0	8.61	4.20	3.61	0.00	1.11	0.00	18.20
74	ER25a	ExonRegion	0	36.24	9.96	13.90	0.96	4.86	0.00	49.01
75	E25_Da	NovelBoundary	1	21.31	6.91	2.86	0.00	5.35	0.99	25.38
76	E25a_E26a	KnownJunction	0	27.42	5.31	17.49	0.00	2.05	0.00	33.32
77	I25	Intron	0	11.29	4.67	2.52	0.54	0.24	1.60	7.58
78	I25_AR1	ActiveIntronRegion	0	11.41	4.71	2.54	0.55	0.23	1.62	7.66
79	E26_Aa	NovelBoundary	0	23.48	6.12	4.43	0.00	2.35	1.31	19.94
80	ER26a	ExonRegion	0	35.95	11.04	15.24	1.77	4.16	0.00	43.16
81	E26a_E27a	KnownJunction	1	49.44	5.73	15.52	1.52	1.18	0.00	30.37
82	I26	Intron	0	10.50	4.19	2.36	0.66	1.44	0.98	12.03
83	I26_AR1	ActiveIntronRegion	0	11.08	2.11	2.98	0.54	0.72	0.34	14.45
84	I26_SR1	SilentIntronRegion	0	10.63	4.60	2.32	0.70	1.58	1.11	11.91
85	ER27a	ExonRegion	0	29.82	11.41	11.38	0.05	5.30	0.81	34.78
86	IG12	Intergenic	0	10.73	4.27	1.82	0.55	4.83	0.54	18.02
87	IG12_AR1	ActiveIntergenicRegion	0	16.71	7.13	2.32	0.67	4.07	0.66	15.07
88	IG12_SR1	SilentIntergenicRegion	0	11.65	10.71	3.40	0.49	6.84	0.00	26.98
89	IG12_AR2	ActiveIntergenicRegion	0	8.93	5.20	2.91	0.29	4.37	0.00	19.78
90	IG12_SR2	SilentIntergenicRegion	0	13.98	7.20	2.14	0.00	5.63	1.23	23.47
91	IG12_AR6	ActiveIntergenicRegion	0	11.04	5.08	1.76	0.84	4.24	0.21	26.09
92	IG12_SR3	SilentIntergenicRegion	0	9.91	3.05	1.57	0.56	4.83	0.60	15.34