Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IRX5	Gene	0	58.85	60.33	68.46	32.95	1.48	21.66	34.02
2	394636	Transcript	0	54.38	80.77	41.91	41.14	0.30	26.65	38.84
3	320990	Transcript	0	38.23	16.95	51.70	8.64	1.14	10.92	18.02
4	IG21_SR1	SilentIntergenicRegion	0	25.27	17.70	17.88	10.57	2.11	12.55	3.45
5	IG21_AR1	ActiveIntergenicRegion	0	27.90	12.62	21.59	11.33	0.77	10.15	4.40
6	IG21_AR17	ActiveIntergenicRegion	0	3.01	0.37	13.89	6.03	0.08	1.48	0.00
7	IG21_SR16	SilentIntergenicRegion	0	2.80	2.55	14.76	8.46	0.20	1.10	0.07
8	IG21_AR21	ActiveIntergenicRegion	0	5.89	3.33	14.25	4.75	0.82	2.42	1.23
9	IG21_SR20	SilentIntergenicRegion	0	7.72	2.96	12.55	4.60	0.90	1.38	0.89
10	IG21_AR22	ActiveIntergenicRegion	0	70.37	38.23	80.56	44.84	15.02	32.28	22.11
11	IG21_AR23	ActiveIntergenicRegion	0	48.61	15.30	71.77	13.42	6.84	13.26	3.99
12	IG21_AR24	ActiveIntergenicRegion	0	62.89	17.73	106.87	7.11	6.80	5.80	6.96
13	IG21_AR25	ActiveIntergenicRegion	0	63.18	25.00	93.78	16.35	13.65	9.24	12.60
14	IG21_SR21	SilentIntergenicRegion	0	48.38	23.39	103.18	14.43	11.37	2.85	11.93
15	IG21_AR26	ActiveIntergenicRegion	0	56.66	20.38	96.55	16.50	10.96	4.97	9.10
16	IG21_SR22	SilentIntergenicRegion	0	40.20	8.33	73.71	6.08	8.54	5.78	7.71
17	IG21_AR27	ActiveIntergenicRegion	0	48.65	15.47	74.44	9.13	5.29	5.92	6.46
18	IG21_AR28	ActiveIntergenicRegion	0	43.28	15.77	80.11	9.30	4.70	9.58	4.60
19	IG21_SR23	SilentIntergenicRegion	0	34.59	27.53	58.63	11.97	8.30	9.18	5.71
20	IG21_AR29	ActiveIntergenicRegion	0	51.34	25.19	70.98	21.75	11.31	8.57	6.26
21	IG21_SR24	SilentIntergenicRegion	0	49.09	14.89	67.02	18.40	8.73	5.56	7.82
22	IG21_AR30	ActiveIntergenicRegion	0	52.56	14.70	70.18	13.47	5.95	2.02	8.43
23	IG21_AR31	ActiveIntergenicRegion	0	41.60	6.06	47.37	6.09	6.04	1.14	3.69
24	IG21_SR25	SilentIntergenicRegion	0	33.77	2.26	39.28	6.90	3.45	4.27	3.67
25	IG21_AR32	ActiveIntergenicRegion	0	38.15	3.52	54.46	6.39	5.63	3.88	5.05
26	IG21_SR26	SilentIntergenicRegion	0	33.79	7.88	57.99	5.66	2.73	1.62	3.30
27	IG21_AR33	ActiveIntergenicRegion	0	94.57	58.92	88.41	71.96	25.18	32.80	28.02
28	IG21_SR27	SilentIntergenicRegion	0	32.81	5.07	44.99	6.37	1.25	1.12	1.70
29	IG21_AR34	ActiveIntergenicRegion	0	21.38	6.91	33.96	10.87	0.41	1.28	3.27
30	IG21_SR28	SilentIntergenicRegion	0	26.02	8.94	31.35	7.48	0.00	1.23	0.67
31	IG21_AR35	ActiveIntergenicRegion	0	28.43	7.80	32.23	10.70	0.00	1.23	0.67
32	IG21_AR36	ActiveIntergenicRegion	0	31.00	8.49	26.62	11.21	0.00	2.91	1.40
33	IG21_AR38	ActiveIntergenicRegion	0	1.50	8.36	0.30	9.82	0.45	3.30	1.57
34	IG21_SR31	SilentIntergenicRegion	0	19.95	10.50	8.73	4.92	0.00	1.58	3.60
35	ER1a	ExonRegion	0	25.78	56.60	21.02	26.42	0.55	10.98	17.44
36	E1a_E2a	KnownJunction	0	46.20	67.52	40.25	40.50	1.08	16.70	22.41
37	I1	Intron	1	22.07	5.93	21.43	5.14	0.08	0.66	2.10
38	I1_AR1	ActiveIntronRegion	1	28.52	7.09	28.76	5.39	0.00	0.36	2.05
39	I1_SR1	SilentIntronRegion	1	19.60	0.03	17.16	6.96	0.00	0.00	1.19
40	I1_SR2	SilentIntronRegion	0	20.12	7.19	16.44	5.45	0.39	1.07	3.01
41	E2_Aa	NovelBoundary	1	41.56	6.44	24.54	4.93	1.11	4.05	4.76
42	ER2a	ExonRegion	0	69.74	89.98	72.68	62.49	1.90	29.29	50.27
43	E2a_E3a	KnownJunction	0	59.00	80.76	45.04	46.11	0.00	25.41	44.13
44	E2a_E3b	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
45	E3_Ab	NovelBoundary	0	27.47	39.33	14.89	16.61	0.00	9.17	16.88
46	ER3a	ExonRegion	0	49.76	80.79	38.78	36.16	0.61	27.89	33.56
47	ER3b	ExonRegion	0	51.81	65.44	56.16	31.41	0.99	20.96	29.59
48	E3_Da	KnownBoundary	0	120.89	107.37	152.20	38.42	0.88	42.02	64.62
49	ER3c	ExonRegion	0	75.42	33.89	103.40	17.28	2.28	21.83	36.04