Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TSNAXIP1	Gene	0	4.95	7.82	4.14	3.24	2.17	1.48	1.21
2	388833	Transcript	0	0	0	0	0	0	0	0
3	339830	Transcript	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	5.12	3.62	4.79	1.01	1.80	1.51	0.46
5	E1_Da	NovelBoundary	0	3.05	8.75	5.36	3.44	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	2.99	0.00	2.64	0.00	2.14	2.71	2.19
7	ER2a	ExonRegion	0	4.02	0.91	2.35	1.87	1.94	4.14	0.77
8	E2a_E3a	KnownJunction	0	0.70	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	2.08	2.45	0.71	0.01	0.01	0.00	0.00
10	E3_Da	NovelBoundary	0	2.54	16.87	0.00	2.49	0.00	1.61	0.00
11	E3a_E4a	KnownJunction	0	2.07	0.00	0.57	0.00	0.00	0.00	0.00
12	E4_Aa	NovelBoundary	0	0.00	11.19	0.00	2.65	0.00	0.00	0.00
13	ER4a	ExonRegion	0	3.68	4.36	1.67	3.70	2.28	0.00	1.21
14	E4_Da	NovelBoundary	0	4.59	9.25	0.00	4.39	0.00	1.63	0.89
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	I4	Intron	0	3.72	8.42	0.81	4.66	0.29	0.75	0.98
17	I4_SR1	SilentIntronRegion	0	3.73	8.44	0.81	4.67	0.29	0.75	0.98
18	E5_Aa	NovelBoundary	0	4.79	16.73	0.89	4.28	0.00	2.92	2.21
19	ER5a	ExonRegion	0	1.66	1.94	0.01	1.01	0.42	0.00	0.55
20	E5_Da	NovelBoundary	0	3.02	13.40	1.22	2.90	0.00	2.41	1.20
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	I5	Intron	0	4.07	11.87	0.74	4.74	0.22	0.33	1.19
23	I5_SR1	SilentIntronRegion	0	4.08	11.92	0.74	4.76	0.22	0.33	1.19
24	E6_Aa	NovelBoundary	0	4.47	15.42	0.89	13.25	1.01	4.42	0.00
25	ER6a	ExonRegion	0	7.58	10.59	6.92	7.68	2.84	4.39	2.09
26	E6_Da	NovelBoundary	0	2.45	20.62	3.87	11.51	2.35	4.56	2.44
27	E6a_E7a	KnownJunction	0	2.55	1.44	6.09	0.00	1.87	2.52	1.25
28	I6	Intron	0	2.40	11.88	1.11	4.24	0.35	1.04	1.00
29	I6_AR1	ActiveIntronRegion	0	2.42	11.94	1.11	4.26	0.35	1.05	1.01
30	E7_Aa	NovelBoundary	0	1.94	18.78	0.83	2.84	0.00	1.63	2.02
31	ER7a	ExonRegion	0	4.99	7.69	4.82	2.11	3.44	0.50	1.09
32	E7_Da	NovelBoundary	0	3.50	19.15	0.85	8.56	0.00	1.23	1.40
33	E7a_E8a	KnownJunction	0	3.04	0.00	2.89	0.00	5.12	0.00	0.53
34	I7	Intron	0	3.20	12.65	0.78	6.73	0.21	0.70	1.68
35	I7_SR1	SilentIntronRegion	0	3.27	13.13	0.83	7.05	0.22	0.73	1.75
36	E8_Aa	NovelBoundary	0	1.45	15.03	0.00	3.14	0.00	1.15	2.46
37	ER8a	ExonRegion	0	3.37	9.73	3.81	2.23	3.62	1.08	1.23
38	E8_Da	NovelBoundary	0	3.42	11.98	2.49	1.16	1.15	3.00	3.02
39	E8a_E9a	KnownJunction	0	1.27	0.00	0.00	0.00	0.92	0.00	0.00
40	E9_Aa	NovelBoundary	0	4.61	27.24	1.54	4.88	0.00	6.06	1.61
41	ER9a	ExonRegion	0	3.50	13.23	4.01	2.70	3.26	3.89	2.23
42	E9_Da	NovelBoundary	0	7.29	17.08	0.00	5.69	0.00	5.82	0.64
43	E9a_E10a	KnownJunction	0	0.58	0.00	1.38	1.68	1.11	2.30	0.00
44	E10_Aa	NovelBoundary	0	2.72	15.92	1.24	1.03	0.00	3.06	1.45
45	ER10a	ExonRegion	0	6.01	8.69	6.24	5.31	2.19	0.94	0.79
46	E10_Da	NovelBoundary	0	2.74	14.29	1.58	5.74	1.18	0.00	3.35
47	E10a_E11a	KnownJunction	0	4.31	1.58	3.38	0.00	1.08	0.00	0.00
48	I10	Intron	0	5.68	15.49	1.33	1.84	0.53	1.78	1.00
49	I10_SR1	SilentIntronRegion	0	5.76	15.66	1.35	1.85	0.53	1.80	1.01
50	E11_Aa	NovelBoundary	0	10.78	36.70	4.80	14.33	0.88	1.63	2.38
51	ER11a	ExonRegion	0	8.20	23.10	5.54	3.25	2.23	2.22	2.41
52	E11_Da	NovelBoundary	0	3.42	16.31	0.56	7.21	0.00	1.10	2.77
53	E11a_E12a	KnownJunction	0	3.66	0.00	5.30	1.38	1.89	0.00	0.00
54	I11	Intron	0	3.31	10.69	1.19	5.12	0.64	0.00	0.77
55	I11_SR1	SilentIntronRegion	0	3.36	10.85	1.21	5.19	0.65	0.00	0.79
56	E12_Aa	NovelBoundary	0	7.06	15.68	3.43	3.36	0.00	0.00	2.87
57	ER12a	ExonRegion	0	6.39	10.45	7.05	7.25	3.11	0.00	1.16
58	E12_Da	NovelBoundary	0	7.84	12.82	2.08	12.62	0.00	0.00	2.22
59	E12a_E13a	KnownJunction	0	3.82	1.63	6.22	1.06	0.00	0.00	1.45
60	I12	Intron	0	4.11	10.13	0.00	2.41	0.35	0.00	0.87
61	I12_SR1	SilentIntronRegion	0	4.16	10.28	0.00	2.45	0.36	0.00	0.88
62	E13_Aa	NovelBoundary	0	1.75	23.57	1.87	11.65	1.18	0.00	1.79
63	ER13a	ExonRegion	0	5.40	3.28	6.56	3.66	2.67	0.00	1.93
64	E13_Da	NovelBoundary	0	5.56	14.84	1.70	5.31	0.00	3.00	3.91
65	E13a_E14a	KnownJunction	0	6.23	1.63	5.83	2.98	3.27	0.00	1.63
66	E14_Aa	NovelBoundary	0	0.90	10.09	1.65	1.44	0.00	0.00	3.05
67	ER14a	ExonRegion	0	5.49	4.42	3.93	6.41	2.40	0.73	0.91
68	E14_Da	NovelBoundary	0	2.37	11.27	0.00	5.91	0.00	0.00	0.89
69	E14a_E15a	KnownJunction	0	3.42	1.63	2.80	2.06	1.13	0.00	0.00
70	E15_Aa	NovelBoundary	0	0.00	8.22	0.86	4.36	0.00	0.00	0.89
71	ER15a	ExonRegion	0	5.42	5.60	4.32	4.17	1.54	0.69	1.22
72	E15_Da	NovelBoundary	0	3.69	11.09	0.00	0.00	0.00	1.66	2.06
73	E15a_E16a	KnownJunction	0	2.14	0.00	2.26	1.38	1.13	1.26	0.89
74	E16_Aa	NovelBoundary	0	1.57	11.74	0.70	2.71	0.00	1.31	1.28
75	ER16a	ExonRegion	0	4.58	9.35	2.13	1.29	0.96	1.54	1.21