Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC138969.4	Gene	0	14.54	14.95	20.00	26.10	9.73	12.18	13.57
2	399309	Transcript	0	4.49	3.56	5.45	7.42	3.71	2.70	3.76
3	381497	Transcript	0	96.91	61.59	134.04	116.98	70.36	48.79	55.20
4	327792	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix_AR3	ActiveIntronRegion	0	2.09	4.83	3.52	8.07	2.91	6.16	3.06
14	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER8a	ExonRegion	0	0.00	0.00	0.00	0.01	0.00	0.00	0.00
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER9a	ExonRegion	0	0.00	0.02	0.32	0.58	0.00	0.00	0.00
21	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix_SR1	SilentIntronRegion	0	0.00	8.05	0.00	2.64	0.30	2.25	0.00
23	ER10a	ExonRegion	0	0.00	0.71	0.10	1.20	3.93	0.09	1.94
24	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER11a	ExonRegion	0	18.36	30.61	25.86	60.45	18.82	20.29	39.28
26	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER12a	ExonRegion	0	24.23	57.05	30.93	84.22	15.07	32.67	40.93
28	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER13a	ExonRegion	0	0.01	0.00	0.43	1.26	1.75	0.30	0.83
30	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER14a	ExonRegion	0	0.00	0.00	0.00	0.90	0.47	0.37	0.23
32	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER15a	ExonRegion	0	0.00	0.00	0.00	0.14	0.00	0.00	0.00
34	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER16a	ExonRegion	0	0.00	0.00	0.00	0.16	0.00	0.00	0.00
36	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER17a	ExonRegion	0	0.27	0.00	0.00	0.47	0.00	0.00	0.00
38	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER18a	ExonRegion	0	0.09	0.00	0.24	1.76	0.03	0.00	0.00
40	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E19_Ab	NovelBoundary	0	134.75	174.42	224.02	230.60	117.13	69.97	187.30
42	ER19a	ExonRegion	0	0.00	0.00	0.00	9.98	1.05	0.00	0.00
43	ER19b	ExonRegion	0	1.72	2.17	7.92	10.42	10.59	4.39	3.81
44	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E19a_E21a	NovelJunction	0	0.00	2.60	0.00	17.47	0.00	1.02	0.00
46	ER20a	ExonRegion	0	44.69	44.65	70.47	92.09	18.31	40.25	41.62
47	E20a_E21a	KnownJunction	0	78.44	63.66	134.94	125.51	32.23	36.26	41.35
48	E20a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E21_Aa	NovelBoundary	0	8.43	4.41	17.45	7.45	51.87	3.14	17.11
50	ER21a	ExonRegion	0	203.39	112.10	240.61	193.51	154.82	75.26	97.55
51	E21_Ab	KnownBoundary	0	651.91	811.34	638.29	891.87	338.32	482.07	515.40
52	ER21b	ExonRegion	0	181.21	102.66	204.92	185.82	45.06	84.06	88.99
53	E21a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER22a	ExonRegion	0	132.29	50.43	154.54	128.21	103.54	51.73	63.40
55	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER23a	ExonRegion	0	33.67	56.00	56.50	56.11	17.37	35.90	25.54
57	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER24a	ExonRegion	0	16.98	13.57	40.95	23.02	10.65	21.85	29.61
59	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER25a	ExonRegion	0	0.03	0.00	1.61	0.06	2.28	0.00	0.00
61	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	E25a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER27a	ExonRegion	0	0.29	0.00	0.00	0.76	0.00	0.00	0.07
66	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER28a	ExonRegion	0	0.60	0.00	2.01	2.15	0.00	0.00	0.67
68	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER29a	ExonRegion	0	5.03	6.60	12.27	16.03	8.98	17.39	11.84
70	ER29b	ExonRegion	0	8.90	9.01	26.59	31.90	24.03	34.84	26.70