Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDXDC1	Gene	0	173.03	219.40	125.60	166.21	277.83	132.20	223.35
2	325823	Transcript	0	40.69	43.93	28.75	37.39	31.91	26.09	34.73
3	334913	Transcript	0	0.04	0.00	0.00	0.00	0.00	0.03	0.00
4	396410	Transcript	0	0	0	0	0	0	0	0
5	325845	Transcript	0	94.42	92.98	58.81	86.24	29.76	48.48	61.31
6	ER1a	ExonRegion	0	81.37	87.87	57.50	74.78	63.81	52.17	69.46
7	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	I1_AR7	ActiveIntronRegion	1	50.00	14.01	12.53	6.54	4.45	6.95	13.56
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	65.89	140.05	57.40	96.93	57.14	92.45	79.93
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER4a	ExonRegion	0	162.64	268.94	147.89	195.02	180.78	145.58	205.70
13	E4a_E5a	KnownJunction	0	258.13	265.03	195.85	192.21	284.36	145.60	244.59
14	E4a_E6a	NovelJunction	1	63.14	80.23	47.16	62.77	15.68	40.87	15.23
15	E5_Aa	NovelBoundary	1	129.78	5.41	82.63	12.49	0.00	7.32	6.89
16	ER5a	ExonRegion	0	228.79	295.56	194.63	206.04	219.74	143.23	248.88
17	E5a_E6a	KnownJunction	0	136.69	236.21	139.92	177.15	93.20	103.98	151.11
18	ER6a	ExonRegion	0	294.42	456.89	282.02	317.80	303.06	225.00	313.32
19	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER7a	ExonRegion	0	220.36	484.66	213.30	311.48	298.95	201.83	313.39
21	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	I7_SR3	SilentIntronRegion	0	32.68	21.07	31.47	11.88	4.52	2.80	18.48
24	I7_AR3	ActiveIntronRegion	0	35.09	13.75	19.18	6.72	4.02	5.75	18.22
25	ER8a	ExonRegion	0	190.25	483.21	158.87	330.10	321.50	199.98	349.14
26	E8a_E9a	KnownJunction	0	177.41	426.62	171.22	312.98	325.67	172.30	334.55
27	I8	Intron	0	32.20	12.84	29.88	10.23	4.80	3.46	22.80
28	I8_AR2	ActiveIntronRegion	0	39.80	14.12	36.83	12.91	4.76	4.16	24.90
29	ER9a	ExonRegion	0	137.36	271.27	110.47	200.38	357.66	108.00	241.84
30	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER10a	ExonRegion	0	220.43	228.18	150.75	216.37	325.03	116.54	320.29
32	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I10_AR3	ActiveIntronRegion	0	25.90	15.56	30.06	5.73	5.65	5.34	16.14
34	ER11a	ExonRegion	0	181.27	248.53	136.80	195.98	231.47	124.93	294.73
35	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER12a	ExonRegion	0	238.07	354.07	159.58	267.95	391.33	172.94	322.36
37	E12a_E13a	KnownJunction	0	425.81	479.03	277.46	389.54	695.99	245.00	483.79
38	ER13a	ExonRegion	0	292.48	425.25	211.76	328.32	402.01	219.73	368.03
39	E13a_E14a	KnownJunction	0	230.04	428.20	190.88	381.74	439.69	250.95	366.81
40	I13_AR6	ActiveIntronRegion	0	40.80	14.41	21.36	4.52	11.22	4.79	18.06
41	ER14a	ExonRegion	0	256.67	446.16	213.39	334.01	368.37	248.90	363.91
42	E14_Da	NovelBoundary	0	52.72	5.73	44.62	2.65	2.95	1.29	24.08
43	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E14a_E16a	NovelJunction	0	9.66	13.85	0.63	10.57	2.10	10.99	1.55
45	I14_AR2	ActiveIntronRegion	0	47.22	17.04	29.95	12.19	12.13	5.61	19.30
46	ER15a	ExonRegion	0	278.08	420.25	216.14	282.92	353.40	208.71	356.15
47	E15_Da	NovelBoundary	1	38.87	12.45	51.79	9.05	15.98	2.71	12.88
48	E15a_E16a	KnownJunction	0	271.23	449.66	203.54	330.94	357.18	232.01	343.29
49	I15_SR1	SilentIntronRegion	0	27.87	14.47	25.62	9.00	7.53	5.92	11.27
50	E16_Aa	NovelBoundary	1	170.42	47.24	106.21	27.50	10.79	13.96	30.11
51	ER16a	ExonRegion	0	211.06	420.16	165.03	303.17	369.18	231.44	338.45
52	E16_Da	NovelBoundary	0	51.17	48.81	21.84	30.50	38.34	20.13	32.59
53	E16a_E17a	KnownJunction	0	172.64	366.78	141.30	263.81	316.40	177.25	293.31
54	ER17a	ExonRegion	0	210.11	367.04	156.87	285.25	321.95	170.29	302.45
55	E17_Da	NovelBoundary	0	55.81	99.20	61.61	66.26	27.09	33.63	56.18
56	E17a_E18a	KnownJunction	0	110.62	213.01	106.00	175.12	279.22	132.85	248.62
57	E17a_E26a	KnownJunction	0	35.88	65.31	16.74	53.34	7.58	37.92	33.94
58	ER18a	ExonRegion	0	135.79	240.13	126.05	199.01	349.30	144.32	283.73
59	E18a_E20a	KnownJunction	0	143.47	231.79	152.11	202.67	354.23	167.39	305.19
60	ER19a	ExonRegion	0	0.07	0.00	0.00	0.00	0.00	0.06	0.00
61	E20_Aa	NovelBoundary	1	71.15	52.78	17.47	18.21	14.98	2.92	28.62
62	ER20a	ExonRegion	0	171.77	273.50	156.40	213.67	365.41	180.17	331.02
63	E20a_E21a	KnownJunction	0	152.21	258.17	138.60	192.24	437.91	130.03	284.13
64	ER21a	ExonRegion	0	151.85	243.70	128.19	196.89	390.21	152.65	276.27
65	E21a_E22a	KnownJunction	0	118.11	164.20	93.12	141.74	301.39	149.30	226.95
66	I21	Intron	0	39.79	38.23	25.11	23.70	5.35	12.63	14.19
67	I21_SR1	SilentIntronRegion	0	42.69	52.60	31.88	32.11	6.23	19.90	16.70
68	I21_AR2	ActiveIntronRegion	0	48.42	37.92	26.66	26.54	4.76	13.17	15.73
69	E22_Aa	NovelBoundary	1	54.18	43.11	18.78	23.54	6.27	15.28	8.64
70	ER22a	ExonRegion	0	152.00	233.91	107.38	191.94	301.01	150.44	270.09
71	E22a_E23a	KnownJunction	0	117.71	250.87	105.95	186.50	233.29	143.06	237.06
72	ER23a	ExonRegion	0	143.78	217.73	114.07	186.17	335.74	155.80	244.61
73	E23a_E24a	KnownJunction	0	144.08	198.48	109.17	171.89	391.39	146.03	262.75
74	E24_Aa	NovelBoundary	1	73.59	34.63	46.78	13.09	4.01	7.34	13.23
75	ER24a	ExonRegion	0	130.85	198.39	101.08	161.30	286.73	155.83	257.03
76	E24a_E25a	KnownJunction	0	109.44	179.75	76.69	113.76	182.49	121.51	175.83
77	ER25a	ExonRegion	0	163.42	151.98	102.87	113.07	299.12	116.71	197.76
78	I25_AR3	ActiveIntronRegion	1	13.89	19.56	28.00	27.66	15.54	8.71	11.21
79	I25_AR7	ActiveIntronRegion	1	27.10	32.07	58.38	72.44	25.68	24.00	7.51
80	E26_Aa	NovelBoundary	0	37.55	101.49	41.31	71.95	10.14	42.67	42.59
81	ER26a	ExonRegion	1	152.95	120.65	100.88	119.14	51.94	59.03	88.68