Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ERCC4	Gene	0	11.87	8.74	18.39	7.16	22.88	7.13	25.64
2	311895	Transcript	0	4.14	1.66	8.99	0.95	8.85	2.96	12.76
3	389138	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG2_SR4	SilentIntergenicRegion	0	0.00	0.00	1.61	0.00	14.10	0.98	1.29
5	IG2_AR4	ActiveIntergenicRegion	0	0.00	0.53	4.80	0.27	45.59	4.97	4.15
6	IG2_AR7	ActiveIntergenicRegion	0	0.22	0.00	17.44	0.00	78.22	2.46	2.84
7	IG2_AR8	ActiveIntergenicRegion	0	0.00	0.00	5.05	0.00	50.81	4.95	4.77
8	IG2_SR10	SilentIntergenicRegion	0	0.02	0.00	0.20	0.00	9.07	0.05	0.16
9	IG2_AR12	ActiveIntergenicRegion	0	0.00	0.00	1.23	0.00	13.41	0.00	0.00
10	IG2_SR12	SilentIntergenicRegion	0	0.00	0.00	0.40	0.00	8.05	0.00	0.04
11	IG2_AR13	ActiveIntergenicRegion	0	0.00	0.00	0.63	0.00	10.14	0.00	0.48
12	IG2_AR14	ActiveIntergenicRegion	0	0.00	0.00	0.67	0.00	13.96	0.22	0.01
13	IG2_AR15	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	13.09	0.00	0.00
14	IG2_SR14	SilentIntergenicRegion	0	0.00	0.00	0.13	0.00	8.15	0.00	0.04
15	IG2_AR16	ActiveIntergenicRegion	0	0.00	0.00	0.37	0.00	9.31	0.00	0.17
16	IG2_AR21	ActiveIntergenicRegion	0	0.23	0.00	0.29	0.50	8.19	0.00	0.00
17	IG2_AR26	ActiveIntergenicRegion	0	0.30	0.00	4.11	0.00	47.20	2.35	1.31
18	IG2_AR31	ActiveIntergenicRegion	0	0.09	0.34	3.17	0.00	26.96	2.45	1.76
19	IG2_SR29	SilentIntergenicRegion	0	0.00	1.21	2.29	0.00	36.97	0.19	2.52
20	IG2_AR32	ActiveIntergenicRegion	0	0.61	0.86	1.94	0.58	61.29	0.98	2.51
21	IG2_AR33	ActiveIntergenicRegion	0	0.34	0.00	3.08	1.62	37.08	1.73	2.33
22	IG2_SR30	SilentIntergenicRegion	0	0.00	0.00	3.25	0.14	42.80	0.91	1.88
23	IG2_AR34	ActiveIntergenicRegion	0	0.69	0.00	4.99	0.00	41.98	2.45	2.17
24	IG2_SR31	SilentIntergenicRegion	0	0.77	0.00	5.42	0.00	32.53	4.29	1.57
25	IG2_AR35	ActiveIntergenicRegion	0	0.89	0.00	3.42	0.00	41.17	2.47	2.58
26	IG2_SR32	SilentIntergenicRegion	0	0.61	0.00	2.82	0.00	46.60	2.49	2.16
27	IG2_AR36	ActiveIntergenicRegion	0	0.21	0.00	2.30	0.00	48.56	3.04	2.04
28	IG2_SR36	SilentIntergenicRegion	0	0.02	0.02	0.15	0.03	10.87	0.06	0.03
29	IG2_AR42	ActiveIntergenicRegion	0	0.00	0.00	2.20	0.00	16.88	0.00	0.39
30	IG2_AR45	ActiveIntergenicRegion	0	0.00	0.00	0.56	0.00	9.35	1.04	0.00
31	ER1a	ExonRegion	0	1.17	0.99	1.48	0.23	2.34	0.64	2.72
32	ER1b	ExonRegion	0	3.30	5.03	4.42	5.56	5.43	4.46	9.36
33	E1a_E2a	KnownJunction	0	5.82	5.23	7.80	11.08	8.92	8.50	17.74
34	ER2a	ExonRegion	0	10.69	11.37	17.28	12.23	22.68	5.28	21.68
35	E2a_E3a	KnownJunction	0	6.34	9.43	12.72	9.48	24.51	5.92	19.61
36	ER3a	ExonRegion	0	15.25	9.66	29.88	11.88	38.39	9.75	30.66
37	E3a_E4a	KnownJunction	0	16.21	3.52	30.12	14.52	45.30	8.90	30.96
38	I3	Intron	0	1.80	0.65	1.29	1.19	7.67	1.57	1.51
39	I3_AR1	ActiveIntronRegion	0	0.70	0.00	2.69	0.26	9.44	0.81	1.20
40	I3_SR1	SilentIntronRegion	0	1.88	0.69	1.20	1.26	7.58	1.63	1.54
41	ER4a	ExonRegion	0	24.26	11.34	33.53	12.52	50.40	8.91	40.00
42	E4a_E5a	KnownJunction	0	18.24	14.03	28.78	15.85	32.90	4.48	27.66
43	ER5a	ExonRegion	0	16.38	10.34	23.20	8.42	26.62	7.84	27.91
44	E5a_E6a	KnownJunction	0	17.12	6.75	27.20	5.34	37.25	2.09	25.74
45	ER6a	ExonRegion	0	13.26	8.33	18.15	4.77	25.17	5.54	15.02
46	E6a_E7a	KnownJunction	0	19.14	9.69	18.64	8.97	34.28	9.00	18.39
47	ER7a	ExonRegion	0	19.08	12.66	23.90	6.18	29.74	11.71	31.80
48	E7a_E8a	KnownJunction	0	26.60	19.02	30.87	11.16	28.12	8.90	43.52
49	ER8a	ExonRegion	0	14.07	12.17	21.79	8.69	25.54	9.40	26.86
50	E8_Da	NovelBoundary	0	1.40	0.00	2.67	2.98	8.35	0.00	0.80
51	E8a_E9a	KnownJunction	0	6.33	3.21	15.81	1.46	16.18	2.30	22.14
52	E8b_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER8b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	I8	Intron	0	2.54	2.16	2.42	2.29	9.06	1.63	3.61
55	I8_AR1	ActiveIntronRegion	0	4.89	3.58	3.98	2.54	13.74	1.80	5.47
56	I8_SR1	SilentIntronRegion	1	1.43	0.00	1.26	1.78	8.73	0.00	8.10
57	I8_AR2	ActiveIntronRegion	0	3.02	2.66	4.39	5.39	11.37	2.69	4.92
58	ER9a	ExonRegion	0	5.38	2.43	15.58	1.25	12.96	4.90	22.26
59	ER9b	ExonRegion	1	4.51	3.69	15.67	4.65	12.41	3.80	18.17
60	E9a_E10a	KnownJunction	1	4.17	2.57	15.91	6.07	9.77	2.95	18.99
61	ER10a	ExonRegion	1	4.76	4.79	16.97	4.59	15.62	3.11	26.33
62	E10a_E11a	KnownJunction	0	6.86	4.12	13.25	3.25	24.60	8.23	23.88
63	ER11a	ExonRegion	0	8.98	6.61	12.94	4.31	16.13	6.19	27.03
64	ER11b	ExonRegion	0	3.70	0.00	3.10	0.85	3.90	3.98	3.90
65	IG3_AR1	ActiveIntergenicRegion	0	12.23	3.33	21.54	4.00	20.21	6.30	23.50
66	IG3_SR1	SilentIntergenicRegion	0	9.64	2.50	16.95	1.54	12.72	2.56	10.30
67	IG3_AR2	ActiveIntergenicRegion	0	8.78	3.35	16.04	3.03	10.58	5.55	18.91