Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WDR90	Gene	0	16.99	41.89	23.69	32.96	24.24	30.92	6.89
2	293879	Transcript	0	16.48	36.64	22.09	31.17	21.55	27.28	7.22
3	389495	Transcript	0	2.74	6.13	3.19	3.79	2.01	4.24	0.20
4	315764	Transcript	0	4.43	7.29	5.71	7.10	7.60	8.14	1.64
5	ER1a	ExonRegion	0	0.00	3.89	0.00	5.26	4.62	1.44	0.00
6	E1a_E2b	KnownJunction	0	0.75	11.95	0.00	8.26	5.19	4.02	0.00
7	E2_Aa	NovelBoundary	0	4.24	5.49	0.88	1.06	0.97	9.06	0.79
8	ER2a	ExonRegion	0	3.86	12.31	1.88	6.14	2.96	7.53	1.07
9	E2_Ab	KnownBoundary	0	9.70	25.19	9.14	9.92	2.77	16.00	2.01
10	ER2b	ExonRegion	0	10.56	46.22	16.36	17.53	8.72	24.09	3.63
11	E2a_E3a	KnownJunction	0	11.10	65.47	27.32	25.30	9.71	29.08	3.55
12	ER3a	ExonRegion	0	18.53	75.09	36.69	36.15	24.59	41.25	5.33
13	E3a_E4a	KnownJunction	0	21.50	80.63	47.11	35.57	27.43	42.99	7.47
14	ER4a	ExonRegion	0	23.57	77.86	35.94	46.01	20.69	49.96	8.45
15	E4a_E4b	KnownJunction	0	0.00	0.00	0.80	1.49	0.00	1.45	0.00
16	E4b_E5a	KnownJunction	0	18.56	67.52	40.19	44.89	31.14	44.59	6.82
17	ER4b	ExonRegion	0	16.60	65.60	38.34	46.39	23.81	45.36	7.83
18	ER4c	ExonRegion	0	19.11	60.59	37.93	42.71	26.12	51.34	9.36
19	ER4d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E4c_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER5a	ExonRegion	0	29.47	68.28	42.58	50.40	25.94	55.94	8.90
22	E5a_E6a	KnownJunction	0	26.12	82.97	47.21	51.55	17.43	65.28	11.09
23	ER6a	ExonRegion	0	28.14	71.80	43.96	64.21	24.26	57.98	11.05
24	E6a_E7a	KnownJunction	0	29.11	72.72	39.52	64.96	16.28	51.11	14.20
25	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.61	0.00
26	ER7a	ExonRegion	0	19.39	67.10	35.10	58.17	16.16	54.18	8.31
27	E7a_E8a	KnownJunction	0	16.54	45.63	28.11	47.76	14.18	41.54	9.26
28	E8a_E8b	KnownJunction	0	0.00	0.00	1.38	0.00	0.00	0.00	0.00
29	E8_Ab	NovelBoundary	0	10.75	27.16	19.18	25.90	8.02	14.58	4.06
30	ER8a	ExonRegion	0	14.36	43.05	23.07	41.62	11.89	37.62	7.25
31	ER8b	ExonRegion	0	14.14	40.58	22.08	39.65	11.50	30.40	6.61
32	ER8c	ExonRegion	0	18.50	43.33	25.53	32.12	22.90	27.21	6.00
33	E8b_E9a	KnownJunction	0	10.60	20.62	12.46	12.87	7.52	14.77	0.00
34	E8b_E9b	KnownJunction	0	6.88	9.25	10.32	7.07	0.88	15.76	1.09
35	ER9a	ExonRegion	0	11.72	23.39	12.87	12.78	8.50	16.24	0.34
36	ER9b	ExonRegion	0	14.12	29.80	13.30	17.28	11.98	17.91	3.54
37	E9a_E10a	KnownJunction	0	14.90	38.12	16.66	15.71	15.70	17.88	1.40
38	ER10a	ExonRegion	1	13.09	38.21	19.23	28.63	12.36	8.35	0.99
39	E10a_E11a	KnownJunction	1	9.70	32.73	28.91	36.68	10.77	7.40	4.00
40	ER11a	ExonRegion	0	13.67	38.32	22.33	26.20	11.76	24.41	5.48
41	E11a_E12a	KnownJunction	0	14.15	41.88	19.33	29.64	17.73	34.79	2.88
42	ER12a	ExonRegion	0	17.09	52.85	29.81	29.70	19.50	28.02	2.76
43	E12a_E13a	KnownJunction	0	13.19	47.16	26.76	26.55	15.93	30.82	5.60
44	E12a_E15a	NovelJunction	0	0.00	1.63	0.00	8.86	0.00	3.73	0.00
45	ER13a	ExonRegion	0	11.25	34.73	23.43	28.74	14.95	18.94	5.23
46	E13_Da	NovelBoundary	0	4.16	17.18	9.05	11.89	3.16	7.77	1.43
47	E13a_E14a	KnownJunction	0	9.25	22.72	16.15	15.69	12.43	13.59	4.67
48	E13a_E15a	NovelJunction	0	1.87	9.64	6.51	4.14	3.46	8.79	0.00
49	E13_Db	NovelBoundary	1	5.64	18.42	8.36	9.70	4.20	3.19	1.59
50	E13b_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER13b	ExonRegion	0	1.22	4.99	2.51	4.62	1.11	0.82	0.60
52	I13	Intron	0	7.38	13.93	11.07	11.10	5.06	4.31	1.73
53	I13_AR1	ActiveIntronRegion	0	7.40	13.97	11.10	11.14	5.08	4.33	1.74
54	E14_Aa	NovelBoundary	0	1.03	9.88	5.37	11.30	7.31	6.91	3.34
55	ER14a	ExonRegion	0	15.27	37.79	22.37	24.87	21.95	19.60	4.35
56	E14a_E15a	KnownJunction	0	15.76	47.92	28.91	20.75	16.99	15.95	5.73
57	ER15a	ExonRegion	0	12.44	48.98	24.90	36.33	13.60	26.97	6.09
58	E15a_E16a	KnownJunction	0	8.61	42.64	21.50	37.93	11.39	16.03	2.67
59	ER16a	ExonRegion	0	13.63	46.70	28.36	41.82	21.51	30.24	9.22
60	E16a_E17a	KnownJunction	0	15.69	50.13	33.09	51.64	21.81	25.94	13.39
61	ER17a	ExonRegion	0	17.18	41.10	29.02	33.64	23.14	33.32	7.26
62	E17_Da	NovelBoundary	0	3.14	13.14	6.47	12.95	4.40	10.40	0.00
63	E17b_E18a	KnownJunction	0	11.85	18.07	13.16	16.28	11.23	18.89	6.65
64	ER17b	ExonRegion	0	10.76	25.51	11.52	16.21	12.15	22.07	7.42
65	I17	Intron	0	5.12	11.38	9.00	13.94	4.87	8.75	1.84
66	I17_AR1	ActiveIntronRegion	0	5.14	11.43	9.04	14.00	4.89	8.79	1.85
67	E18_Aa	NovelBoundary	1	10.65	14.50	13.08	21.27	7.72	7.16	2.32
68	ER18a	ExonRegion	0	18.38	34.75	21.54	28.70	19.60	28.99	7.05
69	E18a_E19a	KnownJunction	0	41.16	57.93	39.89	47.95	18.17	43.50	14.75
70	ER19a	ExonRegion	0	25.84	47.16	29.59	47.20	24.58	29.04	8.85
71	E19a_E20a	KnownJunction	0	27.69	47.87	23.67	45.73	17.75	34.87	9.22
72	ER20a	ExonRegion	0	17.90	30.07	21.98	43.16	19.72	24.62	4.86
73	E20a_E21a	KnownJunction	0	10.25	23.25	22.75	33.57	22.52	33.31	8.33
74	ER21a	ExonRegion	0	16.11	35.26	25.65	34.39	24.88	34.87	10.43
75	E21a_E22a	KnownJunction	0	19.33	37.46	33.84	40.66	22.20	35.30	14.36
76	ER22a	ExonRegion	0	14.96	45.11	26.78	35.59	22.91	29.76	11.34
77	E22a_E23a	KnownJunction	0	19.69	45.40	38.08	44.29	29.28	34.89	11.91
78	ER23a	ExonRegion	0	15.09	39.53	22.31	33.15	19.96	28.40	7.49
79	E23a_E24a	KnownJunction	0	20.26	35.20	23.14	29.96	15.81	23.77	8.11
80	ER24a	ExonRegion	0	15.78	37.99	22.38	27.44	21.34	25.04	6.33
81	E24_Da	NovelBoundary	0	5.87	7.28	3.32	3.01	3.00	10.53	1.46
82	E24a_E25a	KnownJunction	0	15.30	30.05	20.08	20.94	20.82	10.56	2.16
83	ER25a	ExonRegion	0	14.23	33.07	19.15	20.41	10.94	16.42	4.34
84	E25a_E26a	KnownJunction	0	17.52	28.61	20.31	23.60	4.24	17.15	7.40
85	ER26a	ExonRegion	0	15.34	39.85	20.35	24.91	15.35	21.07	7.61
86	E26a_E27a	KnownJunction	1	19.11	27.06	10.19	5.15	16.67	12.33	6.09
87	E26a_E28a	NovelJunction	1	3.07	15.55	12.09	16.77	4.03	4.69	1.58
88	ER27a	ExonRegion	0	17.91	27.08	11.51	16.63	19.75	14.41	5.33
89	E27a_E28a	KnownJunction	0	8.28	17.76	7.52	23.16	17.11	18.09	3.64
90	ER28a	ExonRegion	0	14.17	27.13	15.08	29.66	22.41	24.77	7.07
91	E28_Da	NovelBoundary	0	3.67	3.97	5.95	7.61	1.18	9.73	0.69
92	E28a_E29a	KnownJunction	0	27.87	30.47	31.80	30.86	14.20	22.32	5.80
93	ER29a	ExonRegion	0	13.57	34.26	20.93	31.90	27.07	30.31	7.17
94	E29a_E30a	KnownJunction	0	22.33	39.35	34.69	19.42	35.75	22.11	4.60
95	E30_Aa	NovelBoundary	0	12.50	1.63	13.68	2.09	1.94	1.34	0.75
96	ER30a	ExonRegion	0	22.25	39.21	36.11	40.94	31.06	31.04	11.65
97	E30a_E31a	KnownJunction	0	12.75	37.31	18.22	36.25	21.97	25.81	7.94
98	ER31a	ExonRegion	0	16.02	39.35	23.73	33.96	28.61	26.03	6.06
99	E31a_E32a	KnownJunction	0	15.99	55.93	22.30	46.43	18.58	34.52	11.18
100	ER32a	ExonRegion	0	17.61	43.19	23.17	34.52	29.06	32.53	7.94
101	E32a_E33a	KnownJunction	0	25.20	41.75	20.78	34.16	43.27	17.58	6.12
102	E33_Aa	NovelBoundary	0	0.00	8.54	6.19	10.40	0.00	6.11	1.76
103	ER33a	ExonRegion	0	11.15	27.65	11.03	25.31	21.30	23.49	4.11
104	E33_Da	NovelBoundary	0	7.88	11.72	14.72	13.92	11.41	10.13	3.54
105	E33a_E34a	KnownJunction	0	3.77	8.80	5.03	12.14	5.83	8.90	4.27
106	I33	Intron	0	5.02	12.77	7.69	10.35	8.50	8.56	3.67
107	I33_SR1	SilentIntronRegion	0	3.60	11.38	5.94	12.23	5.38	7.85	2.80
108	I33_AR1	ActiveIntronRegion	0	6.47	14.26	9.48	8.61	11.64	9.36	4.56
109	E34_Aa	NovelBoundary	0	17.34	30.45	12.21	12.16	16.57	17.71	5.13
110	ER34a	ExonRegion	0	13.35	32.24	17.23	19.70	29.39	22.25	8.40
111	E34_Da	NovelBoundary	0	19.73	30.95	16.87	18.42	21.46	14.18	3.63
112	E34a_E35b	KnownJunction	0	9.18	5.78	13.74	10.48	37.83	10.05	4.10
113	I34	Intron	0	14.92	17.98	17.13	13.27	15.31	11.63	4.69
114	I34_AR1	ActiveIntronRegion	0	18.10	20.95	20.76	15.30	17.18	13.68	4.91
115	I34_SR1	SilentIntronRegion	0	13.70	10.38	13.65	7.22	13.57	4.53	2.84
116	I34_AR2	ActiveIntronRegion	0	8.42	16.62	11.23	12.98	12.27	12.04	5.53
117	E35_Aa	NovelBoundary	0	13.49	16.42	17.92	20.24	11.64	13.05	4.20
118	ER35a	ExonRegion	0	8.87	14.59	11.42	14.21	14.31	14.89	2.40
119	E35_Ab	KnownBoundary	0	7.13	21.36	11.58	22.65	15.95	14.45	3.58
120	ER35b	ExonRegion	0	24.45	42.88	33.56	44.98	42.86	37.26	9.72
121	E35a_E36a	KnownJunction	0	15.10	28.98	24.90	35.87	30.68	39.99	7.24
122	ER36a	ExonRegion	0	18.77	55.05	25.99	44.28	47.85	35.27	8.92
123	E36a_E37a	KnownJunction	0	21.80	57.43	27.19	39.28	56.69	46.87	9.16
124	ER37a	ExonRegion	0	25.93	69.52	32.01	46.93	44.22	58.97	12.34
125	E37a_E38a	KnownJunction	0	16.71	56.33	27.09	36.76	54.91	49.07	7.67
126	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	1.39	0.89
127	ER38a	ExonRegion	0	17.74	60.31	26.76	48.11	46.34	48.20	9.89
128	E38_Da	NovelBoundary	0	1.40	12.30	6.18	9.56	5.05	8.12	1.48
129	E38a_E39a	KnownJunction	0	24.03	45.50	19.37	39.47	45.41	48.56	7.57
130	E39_Aa	NovelBoundary	0	2.55	21.78	6.01	17.07	7.33	9.92	5.47
131	ER39a	ExonRegion	0	31.96	49.91	33.62	48.97	51.09	44.79	12.32
132	E39a_E40a	KnownJunction	0	39.42	59.95	42.81	56.92	60.26	46.18	14.47
133	E39a_E41a	NovelJunction	1	0.77	2.92	0.89	25.22	1.78	13.78	0.82
134	ER40a	ExonRegion	0	26.69	50.84	34.24	38.73	52.85	44.84	8.98
135	E40a_E41a	KnownJunction	0	19.78	58.80	25.94	27.66	37.62	26.93	4.72
136	ER41a	ExonRegion	0	16.51	32.15	16.39	30.13	28.92	42.72	5.62