Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TTC23	Gene	0	30.56	12.03	28.59	14.78	42.19	15.98	21.39
2	394129	Transcript	0	4.02	2.08	2.63	1.75	2.18	0.43	1.76
3	394130	Transcript	0	0.33	0.00	0.00	0.00	0.50	0.76	0.00
4	262074	Transcript	0	1.80	1.55	4.01	0.00	2.35	1.26	1.55
5	394135	Transcript	0	4.41	0.00	5.09	0.00	4.29	2.73	0.00
6	394136	Transcript	0	0	0	0	0	0	0	0
7	394132	Transcript	0	2.40	0.03	2.22	1.41	2.74	2.84	2.38
8	ER1a	ExonRegion	0	2.27	1.91	1.18	0.71	4.22	0.00	1.45
9	E1a_E2a	KnownJunction	0	3.92	2.78	2.67	2.65	2.84	0.00	2.62
10	ER2a	ExonRegion	0	2.54	1.41	2.88	1.87	0.82	0.53	1.92
11	E2a_E4a	KnownJunction	0	0.73	0.00	0.82	0.00	0.00	0.00	0.89
12	ER3a	ExonRegion	0	3.66	0.00	5.18	0.30	7.46	1.42	3.46
13	E3_Ab	KnownBoundary	0	8.93	0.00	11.61	0.00	22.61	3.51	8.38
14	ER3b	ExonRegion	0	17.88	3.20	18.86	7.83	26.41	9.73	11.28
15	E3a_E4a	KnownJunction	0	10.98	1.42	8.84	1.65	14.75	2.55	4.23
16	E3a_E5a	KnownJunction	0	1.80	1.55	4.01	0.00	2.35	1.26	1.55
17	E3a_E7a	KnownJunction	0	4.41	0.00	5.09	0.00	4.29	2.73	0.00
18	E4_Aa	NovelBoundary	0	2176.73	2136.29	1881.28	1600.68	1561.88	1770.69	1314.64
19	ER4a	ExonRegion	0	47.06	19.18	41.28	27.67	105.15	19.41	28.43
20	E4a_E5a	KnownJunction	0	10.85	1.08	16.17	11.57	47.05	6.57	10.65
21	ER5a	ExonRegion	1	20.39	4.54	25.84	11.92	36.21	21.45	16.58
22	E5a_E6a	KnownJunction	0	0.70	0.00	0.76	1.27	0.00	3.78	3.28
23	E5a_E7a	KnownJunction	1	26.62	8.75	38.05	13.46	40.87	34.01	27.24
24	E6_Aa	NovelBoundary	0	3633.85	2217.34	3254.28	2039.66	832.67	1668.47	2158.21
25	ER6a	ExonRegion	0	2.39	0.09	2.63	1.27	4.20	1.83	2.05
26	E6_Da	NovelBoundary	0	96.92	23.88	48.40	19.37	63.72	28.38	43.40
27	E6a_E7a	KnownJunction	0	4.12	0.00	3.28	1.68	4.01	2.92	1.81
28	ER7a	ExonRegion	0	48.00	10.85	51.64	16.57	81.09	23.25	41.03
29	E7a_E8a	KnownJunction	1	56.60	2.08	51.32	18.96	78.79	17.69	38.42
30	ER8a	ExonRegion	0	35.85	7.04	47.76	13.50	70.16	14.83	42.31
31	E8a_E9a	KnownJunction	0	31.09	8.09	54.48	19.05	49.33	17.93	47.54
32	ER9a	ExonRegion	0	41.53	6.99	57.10	17.35	68.65	16.31	39.18
33	E9a_E10a	KnownJunction	0	32.31	6.28	46.22	19.05	38.31	18.04	38.78
34	E10_Aa	NovelBoundary	1	11.42	0.00	3.29	0.00	2.24	0.00	0.80
35	ER10a	ExonRegion	0	35.12	11.20	55.86	13.62	68.27	17.71	44.24
36	E10a_E11a	KnownJunction	0	34.50	10.14	44.13	14.98	84.58	18.97	40.10
37	ER11a	ExonRegion	0	26.94	11.70	37.71	15.64	71.12	24.74	42.98
38	E11a_E12a	KnownJunction	1	25.15	1.37	34.56	21.75	95.16	10.24	27.19
39	E12_Aa	NovelBoundary	1	43.43	9.04	15.42	4.14	0.00	0.00	0.60
40	ER12a	ExonRegion	0	66.66	8.48	37.38	15.49	99.57	21.15	36.58
41	E12_Da	NovelBoundary	1	40.91	6.44	14.80	4.12	1.18	1.55	1.49
42	E12a_E13a	KnownJunction	1	66.98	4.31	45.67	16.07	100.37	23.26	30.96
43	I12	Intron	1	12.68	2.05	4.06	1.49	0.63	0.79	0.58
44	I12_SR1	SilentIntronRegion	1	14.91	2.20	4.71	1.50	0.65	0.85	0.60
45	ER13a	ExonRegion	1	97.33	11.52	64.34	20.30	118.66	31.80	37.88
46	E13a_E14a	KnownJunction	1	94.68	10.67	69.95	18.67	121.97	26.99	33.88
47	ER14a	ExonRegion	1	48.82	7.35	33.78	14.24	77.02	21.72	24.89
48	E14_Da	KnownBoundary	0	11.05	1.63	3.22	4.44	3.23	3.32	2.94
49	E14a_E15a	KnownJunction	0	0.65	0.00	0.00	0.00	0.85	1.53	0.00
50	E14a_E16a	KnownJunction	0	12.92	0.00	9.94	3.98	36.61	3.70	19.39
51	ER14b	ExonRegion	1	10.65	4.28	5.60	3.51	3.00	1.62	1.93
52	E14_Db	NovelBoundary	1	11.35	1.13	4.54	1.30	1.04	1.23	1.98
53	I14	Intron	0	10.90	6.42	7.75	6.67	1.48	1.94	1.04
54	I14_AR3	ActiveIntronRegion	0	4.65	5.88	2.78	12.39	1.97	3.81	1.10
55	I14_AR4	ActiveIntronRegion	1	18.75	5.97	11.17	9.10	2.07	3.20	1.08
56	I14_SR4	SilentIntronRegion	0	9.41	7.59	7.87	5.52	0.96	2.17	1.18
57	I14_AR5	ActiveIntronRegion	0	13.64	7.82	11.68	6.66	1.23	1.27	1.03
58	I14_AR7	ActiveIntronRegion	1	32.94	6.28	23.58	4.42	3.12	1.97	1.10
59	E15_Aa	NovelBoundary	1	23.53	16.03	28.77	4.20	14.43	3.43	2.11
60	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.15	0.00	0.00
61	E15_Da	NovelBoundary	1	35.52	7.49	25.64	6.39	11.23	11.12	3.21
62	E16_Aa	NovelBoundary	0	24.07	2.81	17.52	1.46	16.16	3.06	7.40
63	ER16a	ExonRegion	0	15.91	8.18	15.33	13.93	34.29	13.03	20.38
64	E16_Da	NovelBoundary	1	26.20	11.03	34.12	11.68	0.92	2.60	1.43
65	E16a_E17a	KnownJunction	0	11.30	3.65	10.75	6.88	19.16	8.95	26.28
66	I16	Intron	1	18.90	10.03	13.97	7.72	0.88	2.21	0.70
67	I16_AR1	ActiveIntronRegion	1	25.46	10.72	19.62	12.42	1.65	3.01	1.18
68	I16_SR2	SilentIntronRegion	1	13.89	9.65	9.56	4.06	0.29	1.61	0.32
69	E17_Aa	NovelBoundary	1	22.13	11.27	16.31	8.83	0.00	0.00	0.60
70	ER17a	ExonRegion	0	37.11	21.83	33.67	22.80	42.78	22.42	25.01
71	IG26	Intergenic	0	16.54	3.76	6.59	1.79	0.26	0.00	0.00
72	IG26_SR1	SilentIntergenicRegion	0	16.71	3.93	6.24	1.84	0.28	0.00	0.00
73	IG26_AR1	ActiveIntergenicRegion	0	15.01	1.78	11.20	1.19	0.00	0.00	0.00