Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ADAMTSL3	Gene	0	0.80	0.87	0.27	0.43	2.71	6.35	0.86
2	286745	Transcript	0	0.85	1.52	0.65	0.50	6.24	0.00	0.55
3	286744	Transcript	0	1.24	0.94	0.32	0.45	3.53	5.70	1.05
4	ER1a	ExonRegion	0	0.00	0.48	0.16	0.00	0.00	0.53	0.51
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.86	0.00	0.00	0.00	2.34
6	ER2a	ExonRegion	0	0.44	1.62	0.21	0.00	1.44	8.83	1.01
7	E2a_E3a	KnownJunction	0	0.80	1.23	0.00	0.00	4.17	9.30	0.00
8	ER3a	ExonRegion	0	0.67	0.93	0.00	0.38	2.08	9.47	0.86
9	E3a_E4a	KnownJunction	0	0.70	0.00	0.00	1.68	1.91	13.27	2.88
10	ER4a	ExonRegion	0	0.65	0.45	0.00	1.07	1.78	8.57	1.83
11	E4a_E5a	KnownJunction	0	1.03	1.58	0.00	2.84	3.09	4.13	2.35
12	ER5a	ExonRegion	0	0.55	4.62	0.19	2.85	3.35	7.30	2.82
13	E5a_E6a	KnownJunction	0	0.00	7.64	0.63	1.68	0.95	7.50	1.71
14	ER6a	ExonRegion	0	0.53	4.40	0.40	0.27	3.34	9.85	2.48
15	E6a_E7a	KnownJunction	0	0.68	5.41	0.00	0.00	3.30	5.68	2.57
16	ER7a	ExonRegion	0	1.14	3.21	0.66	0.00	3.93	7.66	1.98
17	E7a_E8a	KnownJunction	0	1.00	2.31	0.00	0.00	5.00	5.33	2.25
18	ER8a	ExonRegion	0	1.05	0.42	0.00	0.22	7.55	5.82	2.97
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	2.82	3.18	3.40	2.09
21	E9_Aa	NovelBoundary	0	242.77	268.26	239.51	281.02	109.06	201.37	191.54
22	ER9a	ExonRegion	0	1.71	3.03	1.29	1.01	12.48	0.00	1.10
23	E9_Da	NovelBoundary	0	128.48	123.50	97.43	103.14	9.57	93.13	90.55
24	ER10a	ExonRegion	0	1.51	1.15	0.56	2.27	5.38	6.42	1.43
25	E10a_E11a	KnownJunction	0	0.67	0.00	1.19	0.00	8.64	7.93	0.76
26	ER11a	ExonRegion	0	3.50	0.85	0.37	0.88	9.28	5.59	1.87
27	E11a_E12a	KnownJunction	0	4.62	0.00	0.89	0.00	6.48	7.61	3.14
28	ER12a	ExonRegion	0	3.41	2.46	0.55	0.00	8.19	6.31	2.30
29	E12a_E13a	KnownJunction	0	4.81	4.47	0.00	0.00	10.14	9.33	2.67
30	ER13a	ExonRegion	0	3.81	4.05	0.00	0.73	8.91	7.33	2.38
31	E13a_E14a	KnownJunction	0	1.74	2.26	0.00	1.65	8.85	1.39	1.59
32	ER14a	ExonRegion	0	1.35	1.38	0.25	0.74	6.76	4.55	1.70
33	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	5.56	5.12	0.64
34	ER15a	ExonRegion	0	1.12	0.62	0.00	0.64	5.46	9.24	3.00
35	E15a_E16a	KnownJunction	0	3.00	0.00	0.00	0.00	3.00	8.39	3.01
36	ER16a	ExonRegion	0	0.80	0.71	0.00	1.35	4.19	7.18	3.42
37	E16a_E17a	KnownJunction	0	0.00	1.50	0.00	1.27	2.17	12.09	2.92
38	ER17a	ExonRegion	0	0.60	0.70	0.00	0.59	3.98	7.74	2.43
39	E17a_E18a	KnownJunction	0	0.00	1.21	0.00	0.00	4.52	4.98	0.73
40	ER18a	ExonRegion	0	0.00	1.48	0.14	0.00	3.05	7.20	1.74
41	E18a_E19a	KnownJunction	0	0.00	2.15	0.82	0.00	3.27	4.61	0.00
42	ER19a	ExonRegion	0	0.30	0.96	0.62	0.00	1.98	3.57	1.22
43	E19a_E20a	KnownJunction	0	0.77	0.00	0.76	0.00	0.00	1.37	0.00
44	ER20a	ExonRegion	0	0.33	0.00	0.83	0.00	1.82	7.51	0.87
45	E20a_E21a	KnownJunction	0	2.07	0.00	0.88	0.00	0.00	9.76	0.00
46	ER21a	ExonRegion	0	0.53	0.00	0.28	0.00	1.43	5.82	0.00
47	E21a_E22a	KnownJunction	0	1.03	0.00	0.89	0.00	1.13	6.03	0.00
48	ER22a	ExonRegion	0	0.95	0.82	0.22	0.00	1.97	6.97	0.11
49	E22a_E23a	KnownJunction	0	2.07	1.63	0.00	0.00	2.28	3.97	0.67
50	ER23a	ExonRegion	0	2.25	1.14	0.45	0.14	3.21	5.99	0.72
51	E23a_E24a	KnownJunction	0	1.74	1.00	0.57	1.22	1.04	1.61	0.00
52	ER24a	ExonRegion	0	2.63	1.74	1.30	1.30	3.01	4.14	0.00
53	E24a_E25a	KnownJunction	0	2.84	1.63	0.76	0.00	5.49	2.63	0.00
54	ER25a	ExonRegion	0	1.99	0.23	0.83	0.00	2.72	4.83	0.52
55	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	3.43	1.26	0.59
56	ER26a	ExonRegion	0	1.12	0.00	0.44	0.00	2.33	4.48	0.48
57	E26a_E27a	KnownJunction	0	0.98	0.00	0.00	0.00	0.00	0.00	0.00
58	ER27a	ExonRegion	0	0.14	0.39	0.00	0.00	0.77	1.99	0.84
59	E27a_E28a	KnownJunction	0	0.00	1.26	0.00	0.00	1.18	3.32	0.00
60	ER28a	ExonRegion	0	0.29	0.84	0.26	0.48	1.35	4.81	0.86
61	E28a_E29a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	3.22	0.85
62	ER29a	ExonRegion	0	0.55	0.83	0.00	0.69	1.07	8.43	0.33
63	E29a_E30a	KnownJunction	0	0.62	1.63	0.00	1.44	4.29	10.69	0.00
64	ER30a	ExonRegion	0	0.02	0.23	0.00	1.01	1.28	8.82	0.24
65	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	1.08	6.73	0.00
66	ER31a	ExonRegion	0	0.35	0.26	0.18	0.53	1.59	6.40	0.24