Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DENND4A	Gene	0	126.19	186.01	189.40	263.08	15.05	335.57	35.63
2	308976	Transcript	0	129.29	197.59	195.09	289.67	16.09	357.94	36.69
3	ER1a	ExonRegion	1	17.71	51.92	38.53	86.66	0.70	91.95	2.19
4	E1a_E2a	KnownJunction	1	11.13	48.37	29.19	59.46	0.00	75.04	0.57
5	E1a_E3a	NovelJunction	0	0.85	10.40	0.00	14.33	0.00	15.62	0.00
6	I1_AR2	ActiveIntronRegion	0	27.76	19.24	19.36	4.68	0.37	14.92	2.14
7	I1_AR3	ActiveIntronRegion	0	36.27	20.60	25.61	6.79	0.45	14.75	2.81
8	I1_SR2	SilentIntronRegion	0	27.00	10.89	21.83	5.89	0.51	4.85	1.32
9	I1_SR3	SilentIntronRegion	0	27.11	9.55	33.00	11.76	0.00	4.90	3.57
10	I1_AR6	ActiveIntronRegion	0	28.43	10.53	16.65	4.25	0.17	5.19	3.33
11	I1_AR8	ActiveIntronRegion	0	28.49	11.34	19.87	5.84	0.31	4.78	2.32
12	I1_SR1	SilentIntronRegion	0	26.29	5.26	25.31	5.88	0.96	2.41	1.46
13	E2_Aa	NovelBoundary	1	56.46	11.80	35.32	16.69	0.00	5.82	4.40
14	ER2a	ExonRegion	0	32.67	91.93	45.57	112.29	1.44	145.57	13.19
15	E2a_E3a	KnownJunction	0	42.69	119.46	58.92	174.90	3.00	250.12	14.56
16	ER3a	ExonRegion	0	82.81	234.23	137.76	264.59	5.67	362.34	21.88
17	E3a_E4a	KnownJunction	0	91.98	180.98	163.69	278.25	5.60	307.82	16.12
18	ER4a	ExonRegion	0	93.82	254.57	160.87	285.34	5.93	350.15	28.20
19	E4a_E5a	KnownJunction	0	77.07	235.05	159.50	266.55	3.53	318.01	35.00
20	E4a_E6a	NovelJunction	1	0.00	21.02	0.70	6.72	0.00	16.51	0.64
21	ER5a	ExonRegion	0	85.07	245.71	171.60	268.68	6.69	316.39	36.00
22	E5a_E6a	KnownJunction	0	90.01	208.44	153.32	208.90	4.08	253.07	30.31
23	ER6a	ExonRegion	0	111.55	246.12	203.63	254.00	8.46	284.97	34.18
24	E6a_E7a	KnownJunction	0	167.77	265.60	244.71	263.16	9.08	245.83	26.43
25	ER7a	ExonRegion	1	257.46	306.67	328.29	315.20	16.96	372.60	36.74
26	E7_Da	NovelBoundary	1	69.43	52.99	41.65	13.98	1.98	8.95	0.59
27	E7a_E8a	KnownJunction	0	269.99	347.97	336.44	398.94	27.09	498.58	44.73
28	E8_Aa	NovelBoundary	0	44.03	21.15	28.97	21.51	0.00	4.69	5.63
29	ER8a	ExonRegion	1	288.51	320.49	368.47	383.79	27.73	424.56	42.16
30	E8a_E9a	KnownJunction	0	262.83	281.79	328.39	357.17	35.55	358.21	42.92
31	I8_SR2	SilentIntronRegion	1	28.65	4.72	24.58	1.73	0.00	3.44	0.29
32	ER9a	ExonRegion	0	297.97	316.27	313.03	445.17	27.12	409.73	54.32
33	E9a_E10a	KnownJunction	0	326.30	323.30	293.99	493.49	25.31	449.67	51.35
34	E10_Aa	NovelBoundary	1	38.75	3.02	29.42	4.90	0.00	6.35	1.72
35	ER10a	ExonRegion	0	335.43	367.93	359.13	530.00	28.41	457.53	57.91
36	E10a_E11a	KnownJunction	0	299.13	355.35	284.35	489.83	37.21	407.03	53.11
37	ER11a	ExonRegion	0	197.30	252.92	252.52	329.91	19.43	334.65	48.10
38	E11a_E12a	KnownJunction	0	104.66	222.02	211.63	313.17	13.49	320.26	34.21
39	E11a_E13a	NovelJunction	1	6.69	3.18	16.66	16.34	0.00	29.16	0.00
40	ER12a	ExonRegion	0	155.28	219.74	285.33	314.86	18.13	339.88	50.21
41	E12a_E13a	KnownJunction	0	223.24	216.08	374.65	324.28	14.48	360.54	64.75
42	E13_Aa	NovelBoundary	1	44.98	13.74	28.87	19.86	0.00	19.59	0.00
43	ER13a	ExonRegion	0	164.86	223.57	283.97	290.51	14.99	376.53	44.75
44	E13a_E14a	KnownJunction	0	87.69	173.29	164.02	184.41	19.62	201.91	28.18
45	ER14a	ExonRegion	0	116.71	233.90	209.26	308.19	12.99	336.60	38.22
46	E14_Da	NovelBoundary	1	37.32	30.61	26.57	8.78	1.13	29.69	1.35
47	E14a_E15a	KnownJunction	0	61.30	187.68	98.58	236.32	9.11	259.31	23.66
48	I14_AR1	ActiveIntronRegion	1	37.06	13.56	21.74	11.66	0.41	6.98	1.24
49	ER15a	ExonRegion	0	140.27	224.92	233.27	293.42	19.82	359.43	40.79
50	E15a_E16a	KnownJunction	0	102.03	119.80	162.20	217.84	18.95	213.25	21.74
51	I15	Intron	1	26.93	8.57	17.56	5.33	0.19	6.37	0.77
52	I15_AR1	ActiveIntronRegion	1	27.56	7.25	14.88	4.14	0.03	3.15	0.76
53	I15_SR2	SilentIntronRegion	1	27.26	8.50	18.50	4.67	0.18	4.94	0.78
54	E16_Aa	NovelBoundary	1	61.62	10.14	66.16	4.69	0.00	8.42	1.42
55	ER16a	ExonRegion	0	133.80	169.28	199.84	238.69	16.74	300.62	28.94
56	E16a_E17a	KnownJunction	0	90.63	153.24	157.08	188.20	22.50	262.02	31.77
57	I16	Intron	1	29.63	5.37	21.04	2.63	0.00	3.61	0.57
58	I16_SR1	SilentIntronRegion	1	29.79	5.40	21.15	2.64	0.00	3.63	0.57
59	E17_Aa	NovelBoundary	1	35.75	8.22	13.74	2.71	0.00	4.74	0.66
60	ER17a	ExonRegion	0	100.05	168.06	169.13	224.65	14.88	271.94	31.12
61	E17a_E18a	KnownJunction	0	136.42	175.73	193.30	240.84	22.32	281.77	30.77
62	E17a_E19a	NovelJunction	0	5.77	3.97	1.54	4.33	0.00	14.20	0.86
63	ER18a	ExonRegion	0	136.75	191.33	205.62	264.76	15.36	304.89	37.19
64	E18a_E19a	KnownJunction	0	112.42	177.73	182.40	250.59	8.16	301.10	36.65
65	ER19a	ExonRegion	0	125.42	158.56	176.05	263.81	14.91	282.27	39.00
66	E19a_E20a	KnownJunction	0	83.92	103.82	115.02	235.83	8.48	227.45	21.64
67	I19_AR1	ActiveIntronRegion	0	31.42	26.20	30.62	16.86	4.44	12.23	6.48
68	ER20a	ExonRegion	0	107.40	134.63	169.78	249.74	14.18	292.28	29.93
69	E20_Da	NovelBoundary	1	87.14	44.90	59.23	23.24	0.00	22.32	2.41
70	E20a_E21a	KnownJunction	0	109.05	146.49	174.50	235.53	19.59	289.38	34.08
71	I20	Intron	1	83.11	36.28	52.90	20.78	0.25	29.76	1.25
72	I20_AR1	ActiveIntronRegion	1	83.59	36.51	53.19	20.91	0.25	29.93	1.25
73	I20	Intron	1	35.94	20.72	31.61	10.48	0.52	17.04	1.46
74	I20_SR1	SilentIntronRegion	0	36.05	20.78	31.70	10.51	0.52	17.08	1.46
75	E21_Aa	NovelBoundary	1	45.88	32.71	23.24	6.56	0.00	27.31	0.79
76	ER21a	ExonRegion	0	84.93	148.72	159.34	233.70	14.87	266.72	28.55
77	E21a_E22a	KnownJunction	0	57.60	105.64	78.84	110.29	0.00	161.66	15.95
78	ER22a	ExonRegion	0	211.67	257.02	285.09	340.01	24.05	413.65	50.97
79	E22_Da	NovelBoundary	1	88.01	123.84	42.71	41.96	4.24	40.87	4.64
80	E22a_E23a	KnownJunction	1	72.63	189.15	165.82	288.25	21.09	448.25	45.89
81	I22_AR1	ActiveIntronRegion	1	20.68	38.33	16.60	13.95	4.36	12.80	1.28
82	I22_AR2	ActiveIntronRegion	1	31.37	37.90	17.96	14.03	2.35	13.57	1.90
83	ER23a	ExonRegion	0	68.35	195.37	166.80	321.81	15.26	389.65	45.84
84	E23a_E24a	KnownJunction	1	76.24	203.92	185.95	328.15	20.33	346.17	47.44
85	ER24a	ExonRegion	0	76.64	208.51	201.30	343.54	19.73	411.03	58.87
86	E24a_E25a	KnownJunction	0	93.70	190.65	198.91	367.38	19.36	524.90	49.40
87	ER25a	ExonRegion	0	114.38	220.82	218.00	373.84	17.60	522.66	56.74
88	E25a_E26a	KnownJunction	0	150.28	208.52	235.56	370.66	23.38	549.48	57.64
89	ER26a	ExonRegion	0	116.01	177.96	195.77	272.18	18.52	421.58	45.47
90	E26_Da	NovelBoundary	1	42.23	15.21	42.32	22.46	1.18	10.53	1.75
91	E26a_E27a	KnownJunction	0	74.62	119.17	147.93	223.61	12.38	375.25	31.36
92	ER27a	ExonRegion	0	106.48	162.31	190.36	292.48	16.53	457.59	43.71
93	E27a_E28a	KnownJunction	0	105.33	188.26	181.81	345.28	26.37	491.51	49.40
94	ER28a	ExonRegion	0	105.41	214.91	190.54	388.84	23.85	573.68	58.73
95	E28a_E29a	KnownJunction	1	37.14	139.79	69.06	340.40	11.23	463.26	32.90
96	I28	Intron	1	26.43	26.14	31.48	37.09	0.42	48.36	1.10
97	I28_SR1	SilentIntronRegion	0	26.49	26.19	31.53	37.17	0.42	48.45	1.10
98	ER29a	ExonRegion	0	124.83	150.92	193.16	329.34	30.31	489.40	49.47
99	E29a_E30a	KnownJunction	1	135.61	133.41	183.70	303.42	20.63	502.15	32.48
100	ER30a	ExonRegion	0	198.46	233.83	254.47	475.05	23.00	799.48	43.84
101	E30a_E31a	KnownJunction	0	114.79	196.54	177.78	379.52	23.47	623.58	37.89
102	ER31a	ExonRegion	0	118.56	165.15	184.53	336.97	15.00	508.56	31.34
103	E31a_E32a	KnownJunction	0	135.59	145.81	175.07	276.38	13.42	401.33	28.25
104	ER32a	ExonRegion	0	34.84	36.97	53.63	66.28	5.88	113.30	11.46
105	IG8	Intergenic	0	20.55	29.85	25.44	37.02	3.28	53.75	8.75
106	IG8_AR6	ActiveIntergenicRegion	0	33.29	37.46	50.59	43.03	9.19	69.96	11.07
107	IG8_SR4	SilentIntergenicRegion	0	36.83	56.35	50.90	81.82	7.28	132.77	16.63
108	IG8_AR5	ActiveIntergenicRegion	0	24.04	44.50	38.63	61.49	5.66	91.06	14.18
109	IG8_AR3	ActiveIntergenicRegion	0	26.50	29.98	28.40	37.35	2.63	69.89	9.32
110	IG8_SR2	SilentIntergenicRegion	0	14.79	26.82	17.25	26.87	2.66	29.51	8.46
111	IG8_AR2	ActiveIntergenicRegion	0	17.03	24.07	16.51	26.00	1.96	32.54	5.52
112	IG8_SR1	SilentIntergenicRegion	0	12.43	16.35	13.44	19.88	1.38	24.54	4.78
113	IG8_AR1	ActiveIntergenicRegion	0	21.09	22.78	20.44	28.33	1.28	41.17	6.58