Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HISPPD2A	Gene	0	44.53	28.37	35.53	41.74	29.28	10.35	74.61
2	396907	Transcript	0	0.38	0.27	0.39	0.36	0.06	0.03	0.63
3	396923	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	304953	Transcript	0	9.13	0.76	3.81	3.12	2.02	0.00	6.75
5	381879	Transcript	0	0.00	1.34	0.00	0.00	0.00	0.00	0.85
6	334933	Transcript	0	7.91	4.18	3.81	9.32	3.29	1.65	14.69
7	360135	Transcript	0	0	0	0	0	0	0	0
8	360301	Transcript	0	0	0	0	0	0	0	0
9	335092	Transcript	0	2.86	2.25	2.11	2.20	1.16	0.09	5.77
10	404431	Transcript	0	0	0	0	0	0	0	0
11	381885	Transcript	0	0	0	0	0	0	0	0
12	348806	Transcript	0	0	0	0	0	0	0	0
13	381878	Transcript	0	0	0	0	0	0	0	0
14	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER8a	ExonRegion	0	13.51	9.44	13.69	12.79	1.78	1.15	22.14
30	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER9a	ExonRegion	0	0.21	0.32	0.24	0.09	0.00	0.00	0.43
32	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.29	0.00	0.00
54	ER21a	ExonRegion	0	9.13	0.76	3.81	3.12	2.02	0.00	6.75
55	Ix	Intron	0	7.44	2.05	7.56	9.05	3.12	2.49	7.52
56	Ix_AR1	ActiveIntronRegion	0	7.75	2.21	8.10	9.54	3.34	2.69	7.93
57	Ix	Intron	0	7.57	3.65	3.70	4.82	7.54	1.60	5.51
58	Ix_SR1	SilentIntronRegion	0	7.66	3.68	3.74	4.86	7.62	1.62	5.56
59	Ix_SR1	SilentIntronRegion	0	8.68	2.76	4.09	9.80	6.78	3.04	8.90
60	Ix_SR1	SilentIntronRegion	0	7.69	7.81	5.54	5.46	6.60	5.35	7.09
61	Ix	Intron	0	15.25	5.20	9.13	5.90	7.00	3.16	12.61
62	Ix_AR1	ActiveIntronRegion	0	15.34	5.23	9.18	5.94	7.04	3.18	12.68
63	Ix	Intron	0	4.82	0.88	8.25	3.19	21.29	0.14	17.79
64	Ix_AR1	ActiveIntronRegion	0	4.83	0.88	8.26	3.20	21.32	0.14	17.81
65	ER22a	ExonRegion	0	1.96	1.30	1.23	2.45	1.53	0.00	2.17
66	ER22b	ExonRegion	0	16.14	7.29	11.52	13.72	8.10	1.23	33.06
67	I22_AR2	ActiveIntronRegion	0	14.11	3.11	11.54	7.47	9.43	1.86	18.06
68	I22_AR3	ActiveIntronRegion	0	15.66	2.34	14.20	2.06	9.38	0.00	20.00
69	I22_SR2	SilentIntronRegion	0	15.37	1.21	14.23	1.25	7.15	0.00	19.23
70	I22_AR4	ActiveIntronRegion	0	13.69	1.44	10.78	1.25	4.86	0.00	15.03
71	E23_Ac	NovelBoundary	0	69.63	20.81	36.72	40.37	24.85	9.17	80.11
72	ER23a	ExonRegion	0	15.37	3.64	8.47	6.86	5.26	0.61	15.85
73	ER23b	ExonRegion	0	34.66	8.11	18.48	14.38	11.97	3.50	39.61
74	ER23c	ExonRegion	0	29.26	6.41	15.42	12.57	12.05	2.96	38.90
75	E23a_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	ER24a	ExonRegion	0	7.91	4.18	3.81	9.32	3.29	1.65	14.69
77	E24_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	E24_Ac	KnownBoundary	0	7.06	0.00	0.89	1.54	2.35	1.66	8.73
79	E24_Ad	KnownBoundary	1	23.77	19.31	13.95	23.41	10.79	7.37	54.20
80	ER24b	ExonRegion	0	27.97	15.43	15.78	17.83	14.66	5.64	45.20
81	ER24c	ExonRegion	0	28.73	17.01	16.63	20.99	13.00	7.36	56.97
82	ER24d	ExonRegion	0	40.67	35.26	31.03	46.13	16.64	12.61	84.44
83	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER25a	ExonRegion	0	52.73	54.01	45.43	58.96	28.03	14.59	108.82
85	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER26a	ExonRegion	0	67.45	52.67	48.71	63.06	33.31	11.12	121.99
87	E26_Da	NovelBoundary	1	30.54	3.84	18.05	6.61	0.00	0.00	3.98
88	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	E26b_E27b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
90	ER26b	ExonRegion	1	66.47	44.95	38.44	64.22	30.77	4.29	103.72
91	ER27a	ExonRegion	0	9.32	7.29	5.93	8.73	3.75	0.46	16.44
92	ER27b	ExonRegion	0	66.39	60.61	51.32	82.12	40.56	10.73	120.89
93	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	ER28a	ExonRegion	0	46.35	61.13	40.85	77.72	31.97	18.52	103.81
95	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
96	ER29a	ExonRegion	0	39.66	54.63	49.22	68.35	44.71	18.64	109.36
97	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
98	ER30a	ExonRegion	0	68.56	45.45	65.46	60.29	61.32	14.67	131.37
99	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
100	ER31a	ExonRegion	0	107.68	57.09	84.91	82.43	71.01	13.38	164.76
101	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	ER32a	ExonRegion	0	92.82	54.89	81.95	75.14	64.38	13.49	141.19
103	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
104	ER33a	ExonRegion	1	84.01	60.73	72.41	69.60	50.69	7.65	120.18
105	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
106	ER34a	ExonRegion	0	66.66	42.90	61.17	64.91	41.06	11.99	102.93
107	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
108	ER35a	ExonRegion	0	70.21	39.49	67.65	51.01	35.63	17.02	95.57
109	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
110	ER36a	ExonRegion	0	56.63	45.84	59.32	52.19	34.88	16.99	94.71
111	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
112	ER37a	ExonRegion	1	65.03	65.54	48.47	56.77	37.23	8.02	98.34
113	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
114	ER38a	ExonRegion	1	75.61	63.55	47.59	105.50	45.86	10.60	119.62
115	E38a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
116	ER39a	ExonRegion	0	94.82	58.05	51.94	101.32	51.42	15.76	133.89
117	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
118	ER40a	ExonRegion	0	77.62	58.43	60.00	81.04	54.01	21.16	144.81
119	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
120	ER41a	ExonRegion	0	69.96	55.62	66.39	94.91	53.27	21.58	158.02
121	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
122	ER42a	ExonRegion	0	59.83	49.51	67.43	67.01	54.09	23.77	167.27
123	E42_Da	NovelBoundary	1	59.18	38.36	64.02	68.92	60.31	13.43	141.92
124	E42a_E43b	KnownJunction	0	4.99	3.94	4.63	2.28	2.07	0.00	12.43
125	E42b_E43a	KnownJunction	0	0.00	0.00	0.68	6.64	0.00	0.00	4.36
126	E42b_E43b	KnownJunction	0	70.72	49.97	62.21	88.70	71.72	11.36	140.55
127	E42b_E43c	KnownJunction	0	0.00	1.34	0.00	0.00	0.00	0.00	0.85
128	ER42b	ExonRegion	0	67.72	51.78	68.27	85.99	66.37	13.28	161.87
129	ER43a	ExonRegion	0	7.92	4.39	7.24	15.06	4.80	1.13	16.66
130	ER43b	ExonRegion	0	73.19	59.04	61.65	92.61	53.42	17.65	158.62
131	E43_Ac	KnownBoundary	1	63.14	65.70	59.39	87.53	56.69	22.40	161.10
132	ER43c	ExonRegion	0	56.67	65.24	60.02	102.92	55.31	26.88	182.40
133	E43a_E44a	KnownJunction	0	56.06	71.54	53.53	117.68	48.87	31.41	177.71
134	E44a_E46b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
135	ER44a	ExonRegion	0	58.15	70.70	58.12	109.98	51.61	30.73	178.50
136	ER44b	ExonRegion	0	66.08	73.15	70.64	96.16	63.13	20.50	182.75
137	E44b_E45a	KnownJunction	0	74.95	71.62	77.40	88.18	56.00	17.45	220.20
138	ER45a	ExonRegion	0	59.57	64.19	58.12	94.31	58.91	17.37	175.09
139	E45a_E46a	KnownJunction	0	66.84	49.18	60.11	78.75	40.25	10.72	118.26
140	ER46a	ExonRegion	0	76.66	61.80	72.46	89.46	52.55	29.53	164.80
141	E46_Ab	KnownBoundary	0	83.08	79.50	72.51	105.36	61.94	37.41	184.09
142	ER46b	ExonRegion	0	113.16	63.59	81.04	97.20	65.48	24.97	168.78
143	E46a_E47a	KnownJunction	0	141.38	63.45	104.23	102.49	57.17	51.32	172.49
144	ER47a	ExonRegion	0	87.35	42.92	77.90	74.93	53.67	27.94	138.30
145	E47a_E48a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
146	E47a_E50a	KnownJunction	1	8.66	7.36	14.21	27.04	12.13	7.80	17.47
147	ER48a	ExonRegion	0	103.78	30.35	62.30	46.40	60.93	15.80	128.98
148	E48a_E49a	KnownJunction	0	76.87	17.81	36.07	29.69	75.01	7.34	65.70
149	E48a_E50a	KnownJunction	0	37.42	14.58	27.49	21.05	0.00	7.77	79.63
150	ER49a	ExonRegion	0	70.81	15.54	41.56	29.79	67.32	5.74	79.12
151	E49a_E50a	KnownJunction	0	80.53	17.58	46.52	24.87	56.32	6.14	88.81
152	ER50a	ExonRegion	0	119.35	49.97	75.91	88.48	66.30	20.34	175.56
153	E50_Da	KnownBoundary	0	122.17	56.51	72.90	97.64	85.13	15.41	160.25
154	E50a_E53b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
155	ER50b	ExonRegion	0	113.61	45.65	85.32	85.96	62.75	17.14	175.77
156	E50b_E51a	KnownJunction	0	120.68	43.45	103.55	91.60	43.89	19.56	196.48
157	ER51a	ExonRegion	0	96.22	39.97	68.62	70.58	61.66	19.83	141.86
158	E51a_E52a	KnownJunction	0	0.88	0.00	2.76	1.11	0.00	0.00	0.00
159	E51a_E53a	KnownJunction	0	82.55	33.39	42.08	40.75	52.81	10.24	96.78
160	E52_Aa	NovelBoundary	0	2242.28	1320.30	1618.72	1107.54	939.15	1174.37	1331.13
161	ER52a	ExonRegion	0	24.62	15.37	24.75	10.91	51.10	15.05	16.62
162	E52a_E53a	KnownJunction	0	1.54	5.41	0.66	0.00	0.00	0.00	0.00
163	ER53a	ExonRegion	0	87.09	33.00	59.18	54.60	46.09	10.46	116.65
164	E53_Ab	KnownBoundary	0	91.59	32.42	65.87	64.31	45.81	13.11	100.38
165	ER53b	ExonRegion	0	50.62	24.50	39.05	40.91	31.87	13.54	71.78
166	ER53c	ExonRegion	0	0.00	1.21	0.00	0.00	0.00	3.02	0.67