Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 SEMA6D Gene 0 0.24 0.32 17.25 4.49 25.92 5.35 0.14 2 389425 Transcript 0 0.04 0.00 3.85 0.89 1.59 0.00 0.00 3 355997 Transcript 0 0.00 0.00 0.00 0.00 3.04 0.00 0.00 4 389432 Transcript 0 0 0 0 0 0 0 0 5 358066 Transcript 0 0 0 0 0 0 0 0 6 389433 Transcript 0 0 0 0 0 0 0 0 7 389428 Transcript 0 0 0 0 0 0 0 0 8 354744 Transcript 0 0 0 0 0 0 0 0 9 316364 Transcript 0 0.00 0.00 12.75 4.31 7.54 1.34 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.99 1.06 1.26 0.96 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 2.40 1.52 3.53 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.52 8.25 2.75 12.01 1.08 0.00 13 E2a_E3a KnownJunction 0 0.00 0.97 10.88 2.52 20.52 3.30 0.00 14 ER3a ExonRegion 0 0.00 0.07 12.46 0.95 14.19 5.66 0.00 15 E3a_E4a KnownJunction 0 0.00 0.00 16.32 0.00 6.55 10.69 0.00 16 ER4a ExonRegion 0 0.00 0.00 16.97 2.49 18.16 7.50 0.00 17 E4a_E5a KnownJunction 0 0.00 0.00 14.90 2.17 25.87 2.49 0.00 18 ER5a ExonRegion 0 0.00 0.00 15.45 0.48 22.28 2.41 0.00 19 E5a_E6a KnownJunction 0 0.00 0.00 11.70 0.00 22.64 5.82 0.00 20 ER6a ExonRegion 0 0.00 0.88 16.04 5.22 19.61 6.06 0.00 21 E6a_E7a KnownJunction 0 0.00 0.00 16.12 3.49 18.86 5.60 0.00 22 ER7a ExonRegion 0 0.00 0.93 17.95 3.64 25.92 5.42 0.00 23 E7a_E8a KnownJunction 0 0.00 1.02 19.96 5.45 33.03 4.42 0.00 24 ER8a ExonRegion 0 0.00 2.58 20.64 5.53 28.86 10.42 0.00 25 E8a_E9a KnownJunction 0 0.00 1.31 26.07 7.53 22.25 10.21 0.00 26 ER9a ExonRegion 0 0.00 0.78 21.56 5.27 28.04 7.63 0.00 27 E9a_E10a KnownJunction 0 0.00 0.00 13.91 4.31 23.65 7.32 0.00 28 ER10a ExonRegion 0 0.00 0.00 17.24 2.50 20.42 3.17 0.00 29 E10a_E11a KnownJunction 0 0.00 0.00 17.27 3.22 28.77 4.34 0.00 30 ER11a ExonRegion 0 0.00 0.00 23.76 1.72 21.37 8.14 0.00 31 E11a_E12a KnownJunction 0 0.00 0.00 15.10 2.30 15.05 3.91 0.00 32 ER12a ExonRegion 0 0.24 0.00 17.84 3.94 26.57 7.38 0.19 33 E12a_E13a KnownJunction 0 0.00 0.00 13.92 4.61 20.36 3.06 0.89 34 ER13a ExonRegion 0 0.20 0.00 18.27 6.25 23.79 2.18 0.66 35 E13_Da KnownBoundary 0 0.82 0.00 0.89 0.00 1.15 0.00 0.00 36 E13a_E14a KnownJunction 0 0.80 0.00 10.36 7.21 20.08 2.89 0.64 37 ER13b ExonRegion 0 0.04 0.00 3.85 0.89 1.59 0.00 0.00 38 ER14a ExonRegion 0 1.15 0.40 24.96 4.93 39.92 3.86 0.43 39 E14a_E15a KnownJunction 0 0.00 1.58 19.69 8.59 30.61 7.29 0.00 40 ER15a ExonRegion 0 1.62 1.50 17.02 7.37 22.82 6.66 0.00 41 E15a_E16a KnownJunction 0 0.00 1.05 4.74 1.16 10.37 2.68 0.00 42 E15a_E16b KnownJunction 0 2.25 0.00 18.61 0.00 23.70 4.48 0.00 43 ER16a ExonRegion 0 0.06 0.27 4.91 1.68 11.64 3.31 0.00 44 E16_Ab KnownBoundary 0 0.00 0.00 4.40 2.71 9.43 4.10 0.00 45 ER16b ExonRegion 0 0.74 0.74 27.24 3.21 33.85 8.30 0.00 46 E16a_E17a KnownJunction 0 0.00 0.00 14.69 1.60 33.45 6.22 0.00 47 E16a_E18a KnownJunction 0 0.00 0.00 2.69 0.00 5.28 1.39 0.00 48 E16a_E19a KnownJunction 0 0.00 1.63 2.10 1.27 2.07 0.00 0.00 49 ER17a ExonRegion 0 0.00 0.00 18.10 2.67 16.17 4.11 0.00 50 E17a_E18a KnownJunction 0 0.00 0.00 12.75 4.31 7.54 1.34 0.00 51 E17a_E19a KnownJunction 0 0.00 0.00 3.78 1.68 5.23 0.00 0.00 52 ER18a ExonRegion 0 0.00 0.00 16.10 3.74 16.41 3.61 0.00 53 E18_Da KnownBoundary 0 0.00 0.00 14.54 6.15 19.23 4.23 0.00 54 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 3.04 0.00 0.00 55 ER18b ExonRegion 0 0.00 0.00 18.08 0.96 14.60 2.12 0.00 56 E18b_E19a KnownJunction 0 0.00 0.00 11.90 1.27 12.82 1.66 0.00 57 ER19a ExonRegion 0 0.31 0.34 20.18 5.78 33.17 6.61 0.19