Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SPG11	Gene	0	144.93	60.81	80.90	43.43	111.65	37.67	132.10
2	261866	Transcript	0	141.77	45.70	71.63	24.83	113.23	23.42	128.25
3	ER1a	ExonRegion	0	13.66	15.08	7.01	8.65	6.81	4.90	13.61
4	E1a_E2a	KnownJunction	1	42.59	32.84	17.78	15.33	38.15	5.39	37.91
5	I1_AR1	ActiveIntronRegion	0	3.73	4.06	5.98	8.16	1.63	10.36	1.54
6	ER2a	ExonRegion	1	92.26	57.38	46.04	21.70	56.34	16.30	75.92
7	E2a_E3a	KnownJunction	1	162.98	82.94	69.67	11.35	66.60	26.02	125.47
8	E3_Aa	NovelBoundary	0	3.52	8.70	4.04	11.84	0.90	10.18	1.73
9	ER3a	ExonRegion	0	138.98	81.84	76.79	40.87	84.70	31.23	122.97
10	E3_Da	NovelBoundary	1	4.09	8.41	7.04	25.28	4.40	17.85	2.61
11	E3a_E4a	KnownJunction	1	132.79	56.75	70.93	18.37	73.33	8.68	110.84
12	E4_Aa	NovelBoundary	1	5.42	8.67	12.99	22.76	0.00	12.68	7.68
13	ER4a	ExonRegion	0	129.23	67.86	79.74	44.24	83.39	28.11	131.07
14	E4_Da	NovelBoundary	1	0.00	3.15	6.04	17.80	1.18	12.22	0.00
15	E4a_E5a	KnownJunction	1	105.08	56.90	71.92	26.90	61.04	5.01	117.53
16	ER5a	ExonRegion	1	134.80	71.88	81.56	25.11	89.53	16.71	144.78
17	E5a_E6a	KnownJunction	1	151.18	88.61	73.20	15.69	95.81	19.22	117.19
18	ER6a	ExonRegion	0	109.03	82.19	74.65	29.62	89.00	26.78	121.65
19	E6_Da	NovelBoundary	0	1.85	6.52	8.39	11.84	1.18	15.70	1.49
20	E6a_E7a	KnownJunction	1	90.01	66.20	66.94	23.14	76.67	12.57	93.63
21	ER7a	ExonRegion	1	82.57	58.72	54.31	18.29	59.09	14.59	93.91
22	E7a_E8a	KnownJunction	1	95.52	46.26	71.42	8.43	63.90	21.15	75.61
23	ER8a	ExonRegion	0	125.01	44.22	76.97	18.69	73.69	18.80	92.97
24	E8_Da	NovelBoundary	0	3.34	11.93	2.13	10.05	2.05	17.90	0.00
25	E8a_E9a	KnownJunction	1	99.82	32.50	80.09	12.27	73.95	7.45	94.39
26	I8	Intron	0	3.00	7.74	3.44	6.18	0.88	9.56	0.71
27	I8_SR1	SilentIntronRegion	0	3.02	7.92	3.52	6.27	0.90	9.78	0.73
28	ER9a	ExonRegion	0	126.64	35.89	89.70	20.07	76.90	16.24	111.33
29	E9_Da	NovelBoundary	0	6.56	7.88	4.12	14.25	0.85	4.96	5.23
30	E9a_E10a	KnownJunction	1	91.34	35.36	77.51	10.54	54.82	7.02	102.46
31	I9	Intron	0	7.17	9.14	6.56	18.52	1.22	17.20	3.16
32	I9_SR1	SilentIntronRegion	0	7.20	9.19	6.60	18.62	1.22	17.29	3.17
33	E10_Aa	NovelBoundary	0	5.24	20.99	7.77	17.18	0.00	7.56	1.69
34	ER10a	ExonRegion	0	111.07	49.51	83.15	33.57	77.94	25.87	107.97
35	E10_Da	NovelBoundary	0	2.62	18.76	6.71	28.82	2.17	14.12	1.86
36	E10a_E11a	KnownJunction	1	115.44	37.46	76.71	11.08	98.87	11.44	112.76
37	I10	Intron	0	4.73	8.67	4.41	10.22	0.86	9.02	1.41
38	I10_SR1	SilentIntronRegion	0	4.74	8.69	4.41	10.23	0.87	9.03	1.41
39	ER11a	ExonRegion	0	134.94	40.79	87.83	13.96	67.89	17.83	94.06
40	E11a_E12a	KnownJunction	0	118.23	12.03	65.05	4.04	67.38	10.48	68.58
41	I11	Intron	0	5.23	9.33	3.01	7.94	0.68	9.77	0.96
42	I11_SR1	SilentIntronRegion	0	5.24	9.36	3.02	7.96	0.69	9.79	0.96
43	ER12a	ExonRegion	0	137.86	19.32	77.29	8.35	74.46	13.21	76.84
44	E12_Da	NovelBoundary	0	12.38	11.98	6.60	5.80	0.00	11.58	0.89
45	E12a_E13a	KnownJunction	0	129.03	14.19	77.90	5.85	70.03	13.37	80.51
46	ER13a	ExonRegion	1	189.95	34.84	110.02	10.34	90.47	15.70	99.92
47	E13a_E14a	KnownJunction	1	229.89	34.34	95.65	7.78	110.82	12.33	101.82
48	ER14a	ExonRegion	0	265.00	47.51	134.60	21.11	143.58	27.03	146.46
49	E14_Da	NovelBoundary	1	28.46	8.09	20.46	26.98	0.00	24.71	3.27
50	E14a_E15a	KnownJunction	1	150.11	45.74	81.52	10.08	98.57	17.98	109.36
51	I14	Intron	0	6.17	6.57	6.90	8.73	1.61	8.44	1.79
52	I14_AR1	ActiveIntronRegion	0	6.19	6.59	6.92	8.75	1.61	8.46	1.80
53	ER15a	ExonRegion	0	221.87	53.22	104.39	20.11	128.78	19.02	148.52
54	E15a_E16a	KnownJunction	1	237.85	63.94	113.76	15.85	102.40	7.13	149.65
55	I15_AR1	ActiveIntronRegion	0	3.78	4.46	1.97	4.42	0.30	8.12	0.00
56	E16_Aa	NovelBoundary	0	13.27	24.72	8.46	14.17	2.19	14.90	0.89
57	ER16a	ExonRegion	0	239.98	59.93	115.03	26.86	134.59	29.63	163.91
58	E16_Da	NovelBoundary	0	14.19	17.76	4.90	19.26	5.28	18.06	5.59
59	E16a_E17a	KnownJunction	0	239.42	38.04	99.54	19.59	93.36	21.15	174.36
60	ER17a	ExonRegion	0	197.05	37.21	107.85	23.03	145.58	21.41	169.26
61	E17a_E18a	KnownJunction	0	191.53	27.56	84.47	14.55	180.43	13.96	183.49
62	ER18a	ExonRegion	0	174.10	41.27	82.82	15.14	151.45	26.93	162.85
63	E18a_E19a	KnownJunction	0	128.93	41.75	64.34	13.65	99.40	15.33	148.07
64	E19_Aa	NovelBoundary	0	11.45	7.70	8.33	8.99	2.19	13.29	5.50
65	ER19a	ExonRegion	0	174.89	52.26	89.07	27.09	162.41	26.70	188.89
66	E19_Da	NovelBoundary	0	11.10	11.27	9.63	15.44	5.39	9.59	8.64
67	E19a_E20a	KnownJunction	0	137.94	31.45	59.42	18.31	109.69	27.82	124.31
68	I19	Intron	0	10.46	9.40	9.60	9.16	6.01	9.35	3.79
69	I19_SR1	SilentIntronRegion	0	9.12	9.98	8.69	7.97	5.30	8.32	3.48
70	I19_AR1	ActiveIntronRegion	0	11.05	11.03	12.31	11.69	7.49	11.14	5.45
71	I19_SR2	SilentIntronRegion	0	15.62	6.49	9.10	9.82	6.25	11.16	2.13
72	E20_Aa	NovelBoundary	0	71.45	16.55	31.26	11.97	29.95	11.71	48.87
73	ER20a	ExonRegion	1	122.98	30.53	45.25	8.23	103.29	16.27	120.46
74	E20_Da	NovelBoundary	0	17.54	21.86	10.00	14.55	13.76	25.14	6.39
75	E20a_E21a	KnownJunction	1	104.05	25.96	42.11	5.28	113.77	12.11	120.81
76	I20	Intron	0	11.50	8.68	6.53	11.30	5.91	11.63	3.49
77	I20_SR1	SilentIntronRegion	0	10.22	12.16	7.49	8.93	6.61	15.43	3.10
78	I20_AR2	ActiveIntronRegion	0	7.55	8.59	4.47	13.57	4.48	15.12	1.73
79	I20_SR2	SilentIntronRegion	0	14.32	8.55	6.70	14.87	8.11	8.88	2.83
80	I20_AR3	ActiveIntronRegion	0	15.64	6.02	7.80	9.57	5.90	5.81	4.52
81	I20_SR3	SilentIntronRegion	0	17.09	11.08	9.44	11.77	7.93	20.14	3.70
82	I20_AR4	ActiveIntronRegion	0	9.58	9.45	7.18	13.81	5.80	13.12	5.00
83	I20_AR5	ActiveIntronRegion	0	10.49	8.64	6.14	10.74	4.56	4.45	6.17
84	ER21a	ExonRegion	0	124.82	35.98	62.49	16.25	109.89	25.13	127.54
85	E21_Da	NovelBoundary	0	20.80	17.52	18.55	19.53	1.11	15.73	3.65
86	E21a_E22a	KnownJunction	0	95.13	28.77	69.02	14.52	84.81	8.92	113.49
87	I21	Intron	0	16.08	19.88	10.11	20.74	4.01	22.61	3.58
88	I21_SR1	SilentIntronRegion	0	13.41	12.00	7.27	13.87	3.46	13.08	2.82
89	I21_AR1	ActiveIntronRegion	0	20.13	31.63	14.36	31.02	4.85	36.83	4.71
90	E22_Aa	NovelBoundary	0	8.21	38.67	9.56	46.33	5.58	43.01	1.35
91	ER22a	ExonRegion	0	184.64	56.32	85.49	40.44	135.39	39.99	137.86
92	E22_Da	NovelBoundary	0	34.48	23.64	13.39	33.95	6.57	32.19	6.23
93	E22a_E23a	KnownJunction	0	240.25	23.91	102.30	12.03	213.35	10.21	134.63
94	I22	Intron	0	41.30	34.06	18.92	43.85	3.37	36.48	8.54
95	I22_AR1	ActiveIntronRegion	0	41.58	34.30	19.05	44.19	3.39	36.70	8.60
96	E23_Aa	NovelBoundary	0	38.00	41.98	19.34	49.36	3.78	23.37	7.81
97	ER23a	ExonRegion	0	355.34	54.21	138.94	31.30	265.05	27.05	201.83
98	E23_Da	NovelBoundary	1	41.89	35.57	32.32	42.10	3.00	24.09	7.21
99	E23a_E24a	KnownJunction	1	319.51	45.63	118.14	9.92	232.28	26.59	195.90
100	I23	Intron	0	16.02	25.77	11.00	28.66	2.12	27.51	3.42
101	I23_SR1	SilentIntronRegion	0	18.77	26.42	13.44	32.70	2.89	24.74	2.77
102	I23_AR1	ActiveIntronRegion	0	17.62	31.64	10.16	33.74	2.04	36.81	5.05
103	I23_SR2	SilentIntronRegion	0	6.54	10.16	10.13	6.40	0.68	10.19	0.41
104	E24_Aa	NovelBoundary	0	12.92	27.35	14.77	29.99	1.89	14.85	3.90
105	ER24a	ExonRegion	0	318.09	56.14	133.34	37.59	244.49	41.61	220.14
106	E24_Da	NovelBoundary	0	5.09	18.60	3.41	27.23	0.00	17.55	1.61
107	E24a_E25a	KnownJunction	1	176.45	45.79	86.02	11.81	196.69	22.03	174.03
108	I24	Intron	0	21.36	18.06	13.39	30.62	0.93	27.34	1.03
109	I24_SR1	SilentIntronRegion	0	4.48	7.05	6.23	11.25	0.43	10.15	1.14
110	I24_SR2	SilentIntronRegion	0	26.62	21.53	15.67	36.72	1.09	32.77	1.01
111	E25_Aa	NovelBoundary	1	20.96	44.06	20.95	79.78	3.53	55.58	3.90
112	ER25a	ExonRegion	0	128.31	61.92	78.25	57.47	129.76	49.48	144.61
113	E25_Da	NovelBoundary	0	32.38	46.55	14.14	67.65	0.92	58.32	9.32
114	E25a_E26a	KnownJunction	0	52.71	19.23	28.04	11.41	86.56	5.28	93.68
115	I25	Intron	0	29.27	58.36	22.89	87.19	2.45	86.79	5.26
116	I25_AR1	ActiveIntronRegion	0	30.75	62.69	24.04	92.65	2.72	91.65	5.52
117	I25_SR1	SilentIntronRegion	0	22.52	38.18	17.62	61.92	1.18	64.51	4.07
118	E26_Aa	NovelBoundary	1	24.35	35.36	27.17	55.29	1.18	55.34	1.28
119	ER26a	ExonRegion	0	83.71	55.03	59.96	61.65	89.49	60.66	122.69
120	E26_Da	NovelBoundary	0	9.88	42.66	13.22	42.40	0.00	39.18	4.43
121	E26a_E27a	KnownJunction	0	84.37	30.76	67.54	14.93	100.81	9.49	117.49
122	I26	Intron	0	6.64	7.80	4.25	10.27	0.29	10.90	1.06
123	I26_SR1	SilentIntronRegion	0	7.49	8.84	4.20	11.72	0.33	10.98	1.05
124	I26_SR2	SilentIntronRegion	1	1.24	1.21	4.76	0.96	0.00	10.80	1.19
125	E27_Aa	NovelBoundary	0	7.76	12.90	9.76	19.78	0.00	14.93	3.48
126	ER27a	ExonRegion	0	80.86	31.36	54.72	30.19	97.95	25.53	114.99
127	E27_Da	NovelBoundary	0	3.57	19.47	15.20	23.41	0.00	19.03	5.63
128	E27a_E28a	KnownJunction	0	61.30	20.78	41.82	13.49	87.74	5.90	107.31
129	I27	Intron	0	22.42	21.45	16.66	20.00	2.36	28.65	4.28
130	I27_AR1	ActiveIntronRegion	0	25.21	20.61	17.02	18.72	2.92	28.77	5.31
131	I27_SR2	SilentIntronRegion	0	18.60	20.82	14.93	21.36	1.95	31.61	2.87
132	I27_AR2	ActiveIntronRegion	0	23.25	31.67	22.16	28.08	1.23	31.82	3.59
133	E28_Aa	NovelBoundary	0	6.59	44.40	13.74	25.82	1.18	40.57	5.99
134	ER28a	ExonRegion	0	82.83	47.22	59.42	38.67	85.52	25.54	111.24
135	E28_Da	NovelBoundary	0	19.81	36.44	12.57	21.43	0.00	45.48	5.75
136	E28a_E29a	KnownJunction	0	85.25	25.35	57.85	14.71	88.89	8.95	121.30
137	I28	Intron	0	23.45	22.04	13.84	27.35	1.23	32.98	3.13
138	I28_SR1	SilentIntronRegion	0	31.01	31.15	22.08	25.35	2.42	36.92	4.70
139	I28_SR2	SilentIntronRegion	0	22.23	20.56	12.50	27.72	1.03	32.38	2.87
140	E29_Aa	NovelBoundary	1	8.68	13.06	5.68	34.16	1.01	23.64	1.58
141	ER29a	ExonRegion	0	141.85	46.46	85.17	43.34	130.10	29.53	149.47
142	E29_Da	NovelBoundary	1	7.59	9.12	8.13	21.78	0.00	23.48	0.70
143	E29a_E30a	KnownJunction	0	172.57	35.97	72.71	15.47	139.03	10.29	140.69
144	I29	Intron	0	7.02	11.00	8.77	11.08	0.09	17.72	0.96
145	I29_SR1	SilentIntronRegion	0	7.05	11.04	8.81	11.11	0.09	17.79	0.97
146	E30_Aa	NovelBoundary	1	23.32	34.52	22.36	32.08	0.00	43.44	5.39
147	ER30a	ExonRegion	0	128.51	74.82	82.03	51.37	118.13	58.84	134.81
148	E30_Da	NovelBoundary	1	35.50	52.75	34.29	97.53	8.46	68.85	14.35
149	E30a_E31a	KnownJunction	1	73.92	20.96	38.87	9.27	109.82	13.00	148.13
150	I30	Intron	0	18.98	28.06	14.55	29.49	4.90	29.81	6.31
151	I30_AR1	ActiveIntronRegion	0	43.21	40.32	36.83	45.44	10.47	54.97	10.81
152	I30_AR2	ActiveIntronRegion	0	18.46	40.69	13.12	55.37	5.57	48.71	9.95
153	E31_Aa	NovelBoundary	0	13.97	40.35	11.68	57.43	5.46	31.97	6.68
154	ER31a	ExonRegion	1	86.65	55.54	47.06	45.32	115.30	51.24	162.73
155	E31_Da	NovelBoundary	1	25.82	35.78	18.42	83.63	0.00	64.32	7.60
156	E31a_E32a	KnownJunction	1	98.49	43.64	34.79	9.13	125.52	15.09	174.91
157	I31	Intron	1	37.26	47.02	24.50	62.42	3.76	55.69	6.38
158	I31_AR1	ActiveIntronRegion	1	44.46	55.19	27.38	76.08	3.64	61.33	6.66
159	I31_AR2	ActiveIntronRegion	1	43.22	61.96	30.54	73.05	2.50	80.40	7.25
160	I31_AR3	ActiveIntronRegion	0	38.95	53.17	30.64	63.35	2.23	68.77	8.71
161	I31_SR1	SilentIntronRegion	0	14.17	12.46	12.11	21.78	0.38	18.63	2.99
162	I31_AR4	ActiveIntronRegion	0	29.59	38.63	20.46	47.78	5.30	49.88	6.01
163	E32_Aa	NovelBoundary	0	20.80	71.27	20.16	46.89	1.91	69.04	11.59
164	ER32a	ExonRegion	1	120.53	72.83	55.39	59.35	161.94	56.72	207.31
165	E32_Da	NovelBoundary	0	29.86	34.36	24.14	50.25	16.16	30.42	15.41
166	E32a_E33a	KnownJunction	1	118.31	41.82	41.47	14.82	163.44	22.67	195.91
167	I32	Intron	0	14.81	18.66	8.00	23.55	2.61	19.41	4.80
168	I32_AR1	ActiveIntronRegion	0	24.36	32.13	14.39	37.21	3.21	33.27	7.08
169	I32_SR2	SilentIntronRegion	0	10.71	12.89	4.47	19.81	2.63	13.62	4.56
170	E33_Aa	NovelBoundary	1	87.56	25.06	30.44	54.43	1.08	32.75	4.43
171	ER33a	ExonRegion	0	124.15	49.77	59.28	38.38	153.33	31.09	188.93
172	E33_Da	NovelBoundary	1	88.96	29.56	35.38	64.59	17.47	43.92	10.61
173	E33a_E34a	KnownJunction	1	89.44	27.56	34.92	6.15	186.94	9.49	160.07
174	I33	Intron	0	60.61	62.83	34.14	80.33	7.75	59.28	17.07
175	I33_SR1	SilentIntronRegion	1	68.46	35.39	33.34	45.47	10.83	27.06	6.94
176	I33_AR1	ActiveIntronRegion	0	33.49	23.66	17.99	26.30	4.86	26.36	5.83
177	I33_SR2	SilentIntronRegion	0	70.12	86.67	41.25	112.42	8.18	81.73	24.50
178	E34_Aa	NovelBoundary	0	16.21	75.71	6.70	98.37	9.45	64.99	11.12
179	ER34a	ExonRegion	0	136.35	61.06	47.46	49.06	147.07	39.63	141.97
180	E34_Da	NovelBoundary	0	32.96	61.66	15.81	108.66	3.00	68.29	10.98
181	E34a_E35a	KnownJunction	1	104.73	28.64	31.13	7.88	117.96	15.09	99.10
182	I34	Intron	0	34.90	47.04	20.31	66.51	2.78	42.92	11.03
183	I34_SR1	SilentIntronRegion	0	35.08	47.28	20.41	66.87	2.79	43.14	11.09
184	E35_Aa	NovelBoundary	0	19.19	38.44	16.57	38.01	0.95	29.83	10.13
185	ER35a	ExonRegion	0	175.58	51.98	59.28	52.67	145.45	56.31	148.29
186	E35_Da	NovelBoundary	1	66.26	45.84	47.01	69.76	0.99	44.03	14.15
187	E35a_E36a	KnownJunction	1	145.22	37.07	38.12	11.62	143.64	28.92	148.69
188	I35	Intron	0	41.88	39.13	25.57	54.93	3.35	33.37	14.72
189	I35_SR1	SilentIntronRegion	0	39.05	36.95	25.39	52.28	2.91	32.56	14.39
190	I35_AR1	ActiveIntronRegion	0	21.87	13.13	13.37	18.85	1.65	12.26	6.64
191	I35_AR2	ActiveIntronRegion	0	57.38	52.65	28.28	72.02	5.56	40.13	17.41
192	E36_Aa	NovelBoundary	1	82.97	51.05	39.65	102.51	10.74	59.28	30.76
193	ER36a	ExonRegion	0	182.83	75.76	64.81	69.40	140.09	73.05	169.59
194	E36_Da	NovelBoundary	0	34.38	65.78	22.35	83.63	7.88	94.04	22.57
195	E36a_E37a	KnownJunction	1	90.09	32.29	34.47	8.26	96.87	13.51	113.15
196	I36	Intron	1	61.05	60.66	44.95	73.15	8.45	21.27	37.54
197	I36_AR4	ActiveIntronRegion	1	79.76	79.25	58.64	95.57	11.03	27.79	49.05
198	E37_Aa	NovelBoundary	0	83.38	115.78	75.31	101.08	3.04	55.58	45.30
199	ER37a	ExonRegion	0	96.75	51.79	47.71	36.75	122.12	26.68	128.74
200	E37_Da	NovelBoundary	1	98.92	87.93	57.52	119.69	15.51	48.35	43.32
201	E37a_E38a	KnownJunction	0	106.75	23.85	36.50	12.65	137.99	18.81	111.80
202	I37	Intron	0	46.76	46.25	33.69	62.90	5.97	36.25	24.91
203	I37_AR1	ActiveIntronRegion	0	47.16	46.63	33.99	63.44	6.02	36.56	25.14
204	E38_Aa	NovelBoundary	0	38.77	87.19	35.98	103.08	8.05	55.18	34.22
205	ER38a	ExonRegion	0	131.75	60.86	53.82	62.40	104.53	37.24	90.75
206	E38_Da	NovelBoundary	0	48.53	102.91	33.05	80.92	6.04	45.83	37.16
207	E38a_E39a	KnownJunction	0	153.85	20.96	54.38	15.82	99.17	14.74	85.93
208	I38	Intron	0	56.83	76.36	49.11	82.13	6.31	42.99	27.40
209	I38_AR1	ActiveIntronRegion	1	27.47	66.13	27.89	80.08	5.26	30.95	25.56
210	I38_SR1	SilentIntronRegion	0	49.46	89.53	42.07	92.82	6.18	45.33	28.36
211	I38_AR2	ActiveIntronRegion	0	72.24	68.29	61.78	73.85	6.76	44.71	27.25
212	E39_Aa	NovelBoundary	0	86.44	67.96	58.49	87.72	5.35	72.73	43.41
213	ER39a	ExonRegion	0	263.01	76.34	135.04	78.75	143.53	59.25	124.99
214	E39_Da	NovelBoundary	1	151.53	106.71	120.71	125.65	19.57	59.68	40.36
215	E39a_E40a	KnownJunction	0	158.50	19.44	56.20	16.80	148.44	6.75	98.06
216	I39	Intron	0	69.01	83.13	59.23	88.46	14.66	54.40	29.94
217	I39_AR1	ActiveIntronRegion	0	74.54	97.54	63.75	97.90	11.16	59.27	32.64
218	I39_SR1	SilentIntronRegion	0	74.95	76.22	64.69	91.84	24.43	58.16	31.99
219	E40_Aa	NovelBoundary	1	125.64	173.86	107.16	175.93	44.31	58.69	58.80
220	ER40a	ExonRegion	0	150.69	110.10	120.85	127.22	97.23	81.08	133.12