Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CAPN3	Gene	0	55.23	2.17	19.69	14.99	2.52	8.67	12.27
2	356316	Transcript	0	0	0	0	0	0	0	0
3	337522	Transcript	0	0	0	0	0	0	0	0
4	349748	Transcript	0	10.22	0.00	4.16	4.65	0.00	1.45	4.55
5	318023	Transcript	0	0	0	0	0	0	0	0
6	357568	Transcript	0	0	0	0	0	0	0	0
7	397204	Transcript	0	0.08	0.00	0.07	0.05	0.00	0.00	0.00
8	397200	Transcript	0	30.68	1.34	7.30	16.92	1.97	7.85	6.08
9	337571	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	397163	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	397164	Transcript	0	2.87	0.08	1.20	1.29	0.00	2.08	0.63
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	2.28	0.00	0.91	0.09	0.37	1.15	0.50
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER3a	ExonRegion	1	44.35	0.49	13.53	5.08	1.46	1.06	4.50
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER4a	ExonRegion	0	50.38	2.92	16.55	11.60	1.49	4.05	6.77
19	E4_Da	NovelBoundary	1	31.09	4.33	11.25	24.76	22.71	5.84	53.91
20	E4a_E5a	KnownJunction	1	71.00	7.51	20.03	10.67	1.94	1.47	6.39
21	ER5a	ExonRegion	0	84.76	1.98	31.72	12.95	3.86	7.46	10.92
22	E5a_E10a	KnownJunction	0	34.92	0.00	6.32	4.12	2.97	1.05	4.73
23	I5_AR3	ActiveIntronRegion	1	6.32	1.24	4.14	2.97	0.82	0.63	7.50
24	E6_Aa	NovelBoundary	1	14.59	0.00	3.59	7.48	2.19	1.31	11.57
25	ER6a	ExonRegion	0	11.99	0.45	7.91	5.97	0.40	1.96	4.72
26	E6a_E10a	KnownJunction	1	40.86	0.00	16.50	1.30	1.04	1.10	3.88
27	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER9a	ExonRegion	0	0.23	0.00	0.20	0.15	0.00	0.00	0.00
30	ER10a	ExonRegion	0	78.74	1.27	32.00	8.46	4.27	4.76	10.75
31	E10a_E11a	KnownJunction	0	75.64	1.05	39.98	8.13	3.14	6.22	19.05
32	ER11a	ExonRegion	0	69.89	2.05	32.47	21.95	4.25	7.38	15.88
33	E11a_E12a	KnownJunction	0	70.93	1.60	28.84	19.91	4.15	9.89	16.07
34	ER12a	ExonRegion	0	55.66	1.75	28.89	16.52	3.91	8.80	16.96
35	E12a_E13a	KnownJunction	0	40.36	1.10	15.65	10.70	0.00	4.93	10.35
36	ER13a	ExonRegion	0	43.94	1.37	19.69	15.75	3.64	7.38	11.02
37	E13a_E14a	KnownJunction	1	30.44	2.63	10.49	9.32	0.00	2.79	2.24
38	E13a_E15a	KnownJunction	0	13.87	0.00	7.69	6.29	0.00	2.89	8.54
39	ER14a	ExonRegion	0	35.01	3.19	13.72	9.66	0.61	2.13	5.72
40	E14a_E15a	KnownJunction	1	16.11	5.33	9.04	2.63	0.00	0.00	0.57
41	I14_AR1	ActiveIntronRegion	0	10.75	0.00	6.96	8.16	0.39	3.59	3.94
42	ER15a	ExonRegion	0	34.34	2.56	18.63	10.47	1.50	6.16	10.38
43	E15a_E16a	KnownJunction	0	54.49	5.04	20.41	12.52	2.24	13.45	12.28
44	ER16a	ExonRegion	0	51.65	7.03	19.32	9.66	3.00	14.23	13.20
45	E16a_E17a	KnownJunction	0	54.63	5.91	16.20	11.84	5.05	8.20	17.10
46	ER17a	ExonRegion	0	52.08	5.44	18.91	11.56	2.86	10.56	18.65
47	E17a_E18a	KnownJunction	0	63.64	5.44	21.91	9.21	0.00	17.96	17.04
48	ER18a	ExonRegion	0	51.93	1.91	19.34	8.87	2.28	14.07	13.98
49	E18a_E19a	KnownJunction	0	38.10	1.63	15.99	8.24	4.52	16.37	15.46
50	ER19a	ExonRegion	0	35.23	2.47	20.05	14.33	1.21	11.84	12.81
51	E19a_E20a	KnownJunction	0	44.18	0.00	16.81	7.37	0.99	9.06	9.49
52	E20a_E22a	KnownJunction	0	2.72	0.00	5.10	0.00	0.00	1.55	0.89
53	ER20a	ExonRegion	0	13.83	0.20	13.72	2.91	1.21	6.13	4.27
54	I20	Intron	0	62.47	2.52	17.85	15.97	1.13	5.85	10.47
55	I20_AR1	ActiveIntronRegion	0	62.92	2.53	17.99	16.08	1.14	5.88	10.55
56	E21_Aa	NovelBoundary	0	59.17	0.00	25.52	25.87	5.49	9.14	10.59
57	ER21a	ExonRegion	0	33.31	1.55	9.58	15.95	1.88	4.23	8.97
58	E21_Da	NovelBoundary	1	2.82	1.05	10.94	7.07	0.00	0.00	3.04
59	E21a_E22a	KnownJunction	0	28.04	1.13	5.02	17.88	2.05	11.47	3.20
60	E22_Aa	NovelBoundary	0	12.60	1.31	3.94	9.13	1.04	1.66	5.59
61	ER22a	ExonRegion	0	49.80	3.44	22.12	14.34	2.39	12.15	14.83
62	E22a_E23a	KnownJunction	0	53.52	6.73	28.98	22.57	0.00	8.63	14.16
63	ER23a	ExonRegion	0	50.88	4.53	14.28	13.82	1.38	4.57	6.33
64	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E23a_E28a	KnownJunction	1	31.53	1.37	2.05	4.61	2.26	1.58	0.00
66	E23a_E29b	KnownJunction	0	6.58	0.00	0.63	3.01	0.00	0.00	0.56
67	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	ER24a	ExonRegion	0	0.08	0.00	0.07	2.49	0.00	0.00	0.07
69	E25a_E28a	KnownJunction	0	1.17	0.00	0.00	0.00	0.00	0.00	0.00
70	ER25a	ExonRegion	0	1.15	0.00	0.17	0.94	0.00	0.46	0.67
71	ER26a	ExonRegion	0	3.50	1.04	2.70	2.14	0.69	0.53	3.75
72	E26a_E29b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E26b_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER26b	ExonRegion	0	0.00	0.00	0.15	0.00	0.00	0.00	0.00
75	I26_AR2	ActiveIntronRegion	0	15.75	0.30	5.38	3.64	0.13	0.30	5.89
76	E27a_E29b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	ER27a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	E28_Aa	NovelBoundary	0	16.16	0.00	3.72	7.23	0.00	1.15	8.23
79	ER28a	ExonRegion	0	67.69	4.08	25.11	15.99	1.00	10.35	12.70
80	E28a_E29b	KnownJunction	0	78.84	3.81	28.45	18.26	0.00	14.50	16.27
81	E29_Ab	NovelBoundary	0	31.73	0.00	13.81	4.31	0.00	6.00	3.35
82	ER29a	ExonRegion	0	8.61	0.24	3.45	3.87	0.00	6.25	1.89
83	ER29b	ExonRegion	0	111.81	3.79	39.75	35.98	2.94	17.75	23.93
84	E29a_E30a	KnownJunction	0	130.52	4.57	49.28	27.55	3.00	13.00	28.32
85	ER30a	ExonRegion	0	100.82	5.74	43.97	27.07	4.97	24.69	27.44
86	E30a_E31a	KnownJunction	0	72.35	5.31	25.32	26.52	4.22	33.79	19.62
87	ER31a	ExonRegion	0	92.32	4.02	30.15	29.39	2.65	21.35	20.32
88	E31a_E32a	KnownJunction	0	128.08	4.28	35.61	32.48	4.13	11.23	17.84
89	ER32a	ExonRegion	0	126.27	2.76	37.00	31.08	4.58	17.73	20.38
90	E32a_E33a	KnownJunction	0	94.25	1.26	32.79	33.02	2.24	23.29	23.66
91	ER33a	ExonRegion	0	93.52	2.03	33.99	38.55	7.83	18.47	28.70
92	E33a_E34a	KnownJunction	0	104.66	0.00	33.14	39.80	8.60	14.95	26.10
93	ER34a	ExonRegion	0	168.95	2.33	43.86	42.52	8.93	14.87	38.74
94	E34a_E35a	KnownJunction	0	232.06	3.26	51.00	42.72	7.28	15.68	33.66
95	ER35a	ExonRegion	0	205.06	2.51	47.20	45.76	8.14	18.02	31.41
96	E35a_E36a	KnownJunction	1	208.26	1.63	46.60	43.45	7.65	16.16	23.02
97	ER36a	ExonRegion	0	97.69	3.16	26.85	24.38	4.01	16.15	17.45
98	ER36b	ExonRegion	0	1.92	0.00	0.00	0.00	0.40	0.00	0.67