Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	JDP2	Gene	0	44.52	57.65	47.08	22.02	41.93	92.92	17.51
2	267569	Transcript	0	44.74	68.25	47.95	24.94	41.05	103.76	19.45
3	IG28_SR2	SilentIntergenicRegion	0	8.00	1.21	8.55	11.90	0.00	12.86	0.38
4	IG28_AR3	ActiveIntergenicRegion	0	12.99	0.56	18.97	8.24	0.65	18.87	0.00
5	IG28_SR3	SilentIntergenicRegion	0	3.94	1.28	6.00	7.69	0.17	8.75	0.00
6	IG28_AR16	ActiveIntergenicRegion	0	3.10	0.37	2.12	0.73	0.28	8.93	0.00
7	IG28_SR15	SilentIntergenicRegion	0	6.49	2.24	11.90	2.84	0.32	7.30	0.20
8	IG28_AR17	ActiveIntergenicRegion	0	15.49	4.69	24.78	7.73	1.00	9.28	0.65
9	IG28_SR16	SilentIntergenicRegion	0	13.28	3.11	16.45	5.53	0.95	9.34	0.55
10	IG28_AR18	ActiveIntergenicRegion	0	9.94	6.30	12.38	6.11	1.23	15.97	0.69
11	ER1a	ExonRegion	1	16.75	35.51	21.71	8.23	5.09	39.55	3.19
12	E1_Da	NovelBoundary	1	14.32	12.61	28.08	7.48	5.51	39.42	0.79
13	E1a_E2a	KnownJunction	0	0.70	30.08	3.29	5.85	2.14	33.31	1.58
14	I1	Intron	1	11.96	2.76	12.95	4.17	1.43	11.14	0.35
15	I1_SR1	SilentIntronRegion	1	13.62	4.66	17.05	3.78	1.52	13.28	0.41
16	I1_AR1	ActiveIntronRegion	1	24.17	2.93	19.82	6.24	2.46	21.70	1.03
17	I1_AR3	ActiveIntronRegion	1	18.47	4.16	16.19	4.87	2.61	10.76	0.50
18	I1_SR4	SilentIntronRegion	1	10.01	1.51	13.03	3.65	1.53	7.46	0.35
19	I1_AR4	ActiveIntronRegion	1	11.14	2.83	18.06	3.74	0.00	13.28	0.00
20	E2_Aa	NovelBoundary	0	1.00	1.52	2.31	9.29	0.00	3.59	0.00
21	ER2a	ExonRegion	0	41.26	80.37	47.07	21.18	31.60	113.79	18.46
22	E2a_E3a	KnownJunction	0	77.41	84.17	70.93	32.40	74.67	121.22	34.04
23	I2_AR2	ActiveIntronRegion	1	13.74	2.39	12.11	1.58	0.68	5.54	0.00
24	ER3a	ExonRegion	0	78.42	97.52	76.89	36.41	64.93	171.13	39.40
25	E3a_E4a	KnownJunction	0	51.69	96.55	66.98	47.25	60.65	156.19	21.65
26	ER4a	ExonRegion	0	46.93	53.53	48.81	23.29	48.28	91.16	17.85
27	IG29_AR2	ActiveIntergenicRegion	0	6.04	6.70	4.40	2.30	4.66	9.47	0.84