Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POMT2	Gene	0	53.77	40.95	91.17	69.33	57.60	26.35	53.94
2	261534	Transcript	0	92.35	64.25	149.24	94.03	87.49	39.27	78.62
3	ER1a	ExonRegion	0	11.96	30.11	22.74	37.43	9.26	16.71	12.68
4	E1a_E2a	KnownJunction	0	43.94	73.40	83.29	79.49	27.16	43.31	48.35
5	E1a_E3a	NovelJunction	1	5.61	15.47	19.67	11.84	5.53	10.88	4.59
6	ER2a	ExonRegion	0	65.72	77.38	107.90	87.76	48.36	32.37	57.54
7	E2a_E3a	KnownJunction	0	76.61	83.07	130.14	90.81	60.31	28.43	67.69
8	ER3a	ExonRegion	0	73.85	94.56	163.23	92.66	73.95	56.50	91.12
9	E3_Da	NovelBoundary	1	17.84	18.39	19.69	17.04	4.22	8.82	2.97
10	E3a_E4a	KnownJunction	0	93.46	100.49	166.95	101.81	110.84	51.88	101.21
11	ER4a	ExonRegion	0	72.47	95.66	145.25	106.67	74.91	50.36	96.41
12	E4a_E5a	KnownJunction	0	60.55	96.13	146.06	112.97	78.15	68.69	112.79
13	E4a_E8a	NovelJunction	0	6.36	5.49	12.78	17.61	0.00	8.68	2.52
14	E4a_E9a	NovelJunction	1	7.26	3.10	19.62	5.61	10.70	3.06	4.70
15	ER5a	ExonRegion	0	61.74	64.38	111.92	86.64	65.51	41.30	72.47
16	E5a_E6a	KnownJunction	0	57.05	32.37	65.51	58.98	52.40	12.54	54.10
17	E5a_E7a	NovelJunction	1	9.80	21.62	28.64	23.54	3.34	11.98	4.56
18	E5a_E8a	NovelJunction	0	5.87	1.63	8.21	8.75	0.00	0.00	7.05
19	ER6a	ExonRegion	0	61.12	43.93	92.56	59.36	70.30	22.14	69.97
20	E6_Da	NovelBoundary	1	21.88	0.00	42.98	5.31	0.90	0.00	0.89
21	E6a_E7a	KnownJunction	0	64.36	59.43	107.38	52.69	84.56	26.34	89.06
22	ER7a	ExonRegion	0	76.58	59.98	136.99	73.68	91.92	26.06	77.83
23	E7a_E8a	KnownJunction	0	76.79	57.25	150.40	85.28	112.18	32.32	65.97
24	ER8a	ExonRegion	0	98.99	51.54	188.31	103.84	96.79	41.49	98.11
25	E8a_E9a	KnownJunction	0	101.07	57.80	187.19	108.82	89.24	40.68	103.34
26	ER9a	ExonRegion	0	98.19	65.29	179.00	117.76	86.00	39.52	92.23
27	E9_Da	NovelBoundary	1	34.73	0.00	66.98	1.14	1.18	0.00	5.02
28	E9a_E10a	KnownJunction	0	90.31	57.11	173.52	94.11	81.95	46.47	95.26
29	ER10a	ExonRegion	0	126.75	94.67	220.56	117.38	106.14	50.03	112.13
30	E10a_E11a	KnownJunction	0	126.39	91.32	228.75	123.13	120.01	35.38	91.53
31	ER11a	ExonRegion	0	112.67	82.28	209.57	113.22	95.54	48.72	95.59
32	E11a_E12a	KnownJunction	0	104.75	73.30	179.43	95.31	99.13	51.43	93.23
33	ER12a	ExonRegion	0	107.81	60.67	190.30	103.02	97.69	33.89	91.60
34	E12a_E13a	KnownJunction	0	111.00	64.29	209.32	127.92	71.49	48.80	93.57
35	ER13a	ExonRegion	0	112.86	65.60	209.44	111.27	103.40	47.56	89.03
36	E13a_E14a	KnownJunction	0	111.27	82.12	231.49	120.04	134.33	55.88	108.96
37	ER14a	ExonRegion	0	111.72	66.08	196.40	90.93	114.93	49.71	92.92
38	E14_Da	NovelBoundary	1	20.56	18.36	50.17	23.00	4.66	2.89	10.92
39	E14a_E15a	KnownJunction	0	135.37	45.69	163.45	69.65	95.83	45.91	97.45
40	I14	Intron	0	24.85	12.98	32.54	15.38	4.16	3.88	5.12
41	I14_SR1	SilentIntronRegion	1	19.56	13.05	28.70	12.23	4.22	2.64	5.69
42	I14_AR1	ActiveIntronRegion	1	32.58	12.93	38.22	20.01	4.10	5.69	4.31
43	E15_Aa	NovelBoundary	1	43.79	15.61	55.84	25.68	5.56	8.36	4.93
44	ER15a	ExonRegion	0	161.76	78.51	208.02	104.45	136.30	61.52	103.52
45	E15a_E16a	KnownJunction	0	122.02	73.11	180.18	130.58	119.69	62.82	94.23
46	ER16a	ExonRegion	0	129.10	62.16	189.57	115.86	135.80	52.05	90.60
47	E16a_E17a	KnownJunction	1	147.17	63.47	186.54	102.13	149.91	52.77	72.26
48	E17_Aa	NovelBoundary	1	22.71	16.08	15.42	15.28	4.59	2.22	8.38
49	ER17a	ExonRegion	1	187.02	67.69	209.65	140.37	144.38	50.59	80.20
50	E17a_E18a	KnownJunction	1	195.54	71.83	205.12	149.65	127.32	45.88	81.60
51	ER18a	ExonRegion	0	105.81	55.78	124.66	104.91	91.53	35.44	68.67
52	E18_Da	NovelBoundary	1	47.25	22.33	46.46	57.60	13.69	17.80	12.54
53	E18a_E19a	KnownJunction	0	40.42	28.16	41.29	32.78	61.55	10.37	35.33
54	I18	Intron	0	15.79	6.86	23.16	17.29	7.72	2.87	4.55
55	I18_AR1	ActiveIntronRegion	1	19.43	8.38	28.12	22.24	8.81	3.55	5.52
56	ER19a	ExonRegion	0	78.24	44.61	95.56	82.56	75.65	25.27	52.12
57	E19a_E20a	KnownJunction	0	65.78	50.02	86.28	84.14	47.60	23.02	51.15
58	ER20a	ExonRegion	0	37.31	40.67	61.13	75.18	43.65	21.32	36.65
59	E20a_E21a	KnownJunction	1	39.27	47.68	76.51	55.29	58.42	6.46	43.28
60	E21_Aa	NovelBoundary	1	12.27	1.23	25.02	4.50	2.26	1.02	0.72
61	ER21a	ExonRegion	0	31.62	24.85	57.25	54.81	43.01	18.05	41.50