Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPGRIP1	Gene	0	1.88	0.23	0.53	0.30	3.36	0.28	0.28
2	206660	Transcript	0	0.00	0.00	0.00	0.00	0.26	0.00	0.00
3	400017	Transcript	0	0.00	0.00	0.00	0.00	0.62	0.00	0.00
4	382933	Transcript	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
5	307974	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1_Da	NovelBoundary	0	33.81	6.44	24.99	2.79	0.00	9.84	3.71
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	0.00	0.00	0.19	0.35	0.17	0.00	0.00
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	1.20	0.00	0.00
14	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	1.60	0.00	0.00
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	3.41	0.00	0.00
17	ER6a	ExonRegion	0	0.00	0.00	0.97	0.89	3.37	0.00	0.00
18	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E7a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	0.00	0.00
20	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.74	0.00	0.00
21	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.77	0.00	0.00
24	ER9b	ExonRegion	0	0.00	0.00	0.00	0.00	3.52	0.00	0.00
25	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	3.27	0.00	0.00
26	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	3.63	0.00	0.00
27	E10a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	1.98	0.00	0.00
28	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.04	0.00	0.00
29	E11_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER11b	ExonRegion	0	0.00	0.00	0.00	0.00	3.17	0.00	0.00
31	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	4.26	0.00	0.00
32	ER12a	ExonRegion	0	0.62	0.00	0.00	0.00	1.61	0.00	0.00
33	E12a_E13a	KnownJunction	0	2.79	0.00	0.00	0.00	1.87	0.00	0.00
34	ER13a	ExonRegion	0	2.33	0.00	0.00	0.00	1.75	0.00	0.00
35	E13a_E14a	KnownJunction	0	1.57	0.00	0.00	0.00	0.95	0.00	0.00
36	ER14a	ExonRegion	0	2.46	0.00	0.00	0.00	3.62	0.00	0.00
37	E14a_E15a	KnownJunction	0	2.34	0.00	0.00	0.00	0.00	0.00	0.00
38	E14a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	2.07	0.00	0.00
39	ER15a	ExonRegion	0	3.37	0.00	0.00	0.00	0.69	0.00	0.00
40	ER15b	ExonRegion	0	6.29	0.00	0.00	0.00	4.59	0.00	0.00
41	E15_Da	KnownBoundary	0	3.57	0.00	0.00	0.00	3.09	0.00	0.00
42	E15a_E15c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER15c	ExonRegion	0	3.36	0.00	0.00	0.00	3.93	0.00	0.34
44	E15_Ac	KnownBoundary	0	1.62	0.00	0.00	0.00	2.33	0.00	0.00
45	ER15d	ExonRegion	0	1.56	0.00	0.72	0.00	2.80	0.00	0.26
46	E15b_E16a	KnownJunction	0	4.62	0.00	0.79	0.00	1.01	0.00	0.00
47	ER16a	ExonRegion	0	6.53	0.00	0.43	0.02	4.01	0.00	0.00
48	E16a_E17a	KnownJunction	0	6.88	0.00	0.00	0.00	0.00	0.00	0.00
49	ER17a	ExonRegion	0	3.22	0.00	0.00	0.27	3.53	0.54	0.00
50	E17a_E18a	KnownJunction	0	3.92	0.00	0.00	0.00	4.20	0.00	0.00
51	ER18a	ExonRegion	0	3.02	0.00	0.00	0.50	2.42	0.00	0.00
52	E18a_E19a	KnownJunction	0	4.07	0.00	0.00	0.00	5.53	0.00	0.00
53	ER19a	ExonRegion	0	2.46	0.00	0.33	0.48	3.53	0.00	0.00
54	E19a_E20a	KnownJunction	0	0.83	0.00	0.00	0.00	7.10	0.00	0.00
55	ER20a	ExonRegion	0	0.53	0.00	0.60	0.00	3.04	0.00	0.00
56	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	4.13	0.00	0.00
57	ER21a	ExonRegion	0	0.16	0.48	0.00	0.00	3.53	0.00	0.00
58	E21a_E22a	KnownJunction	0	0.87	1.63	0.00	0.00	3.04	0.00	0.00
59	ER22a	ExonRegion	0	0.99	0.70	0.53	0.00	2.29	0.48	0.00
60	E22a_E23a	KnownJunction	0	1.74	0.00	0.00	0.00	2.35	0.00	0.00
61	ER23a	ExonRegion	0	1.26	0.00	0.00	0.00	2.09	0.00	0.00
62	E23a_E24a	KnownJunction	0	1.00	0.00	0.00	0.00	2.28	0.00	0.00
63	ER24a	ExonRegion	0	1.08	0.00	0.75	0.00	1.49	0.00	0.00
64	E24a_E25a	KnownJunction	0	1.29	0.00	0.00	0.00	2.03	0.00	0.00
65	I24_AR2	ActiveIntronRegion	0	7.13	5.97	7.32	8.71	31.30	7.01	6.97
66	E25_Aa	NovelBoundary	0	7.96	8.30	6.62	11.22	21.23	7.66	5.85
67	ER25a	ExonRegion	0	8.50	3.73	7.23	3.87	21.43	4.27	5.22
68	IG27	Intergenic	0	7.11	1.56	8.70	4.26	16.87	4.19	4.32
69	IG27_AR1	ActiveIntergenicRegion	0	7.15	1.56	8.74	4.28	16.95	4.21	4.34