Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FARP1	Gene	0	263.09	85.01	46.93	14.14	305.63	21.51	104.14
2	376584	Transcript	0	3.29	0.01	2.23	0.00	6.28	0.00	0.01
3	319562	Transcript	1	173.09	81.49	24.62	3.71	220.85	12.14	109.96
4	376586	Transcript	0	2.51	3.62	0.99	2.32	8.88	0.67	3.97
5	376581	Transcript	0	4.31	3.24	0.20	0.00	4.92	0.43	2.33
6	ER1a	ExonRegion	0	0.37	0.00	0.00	0.00	0.00	0.80	0.05
7	E1_Ab	KnownBoundary	0	1.59	1.34	0.00	0.00	0.00	1.63	0.00
8	ER1b	ExonRegion	0	9.95	14.99	1.41	2.95	4.59	5.21	5.50
9	E1a_E2a	KnownJunction	1	35.38	60.16	5.37	2.52	29.53	8.90	16.88
10	ER2a	ExonRegion	0	163.98	112.18	36.68	12.28	176.11	23.71	73.44
11	E2a_E3a	KnownJunction	0	2.22	0.97	0.00	0.00	1.73	0.00	2.48
12	E2a_E4a	KnownJunction	0	397.39	142.76	84.48	25.63	256.81	21.12	131.15
13	E2a_E5a	NovelJunction	0	1.55	8.85	0.00	1.68	4.31	0.00	0.86
14	ER3a	ExonRegion	0	6.41	5.51	0.39	0.00	8.11	0.85	2.19
15	ER4a	ExonRegion	0	344.49	186.53	71.62	20.90	290.14	27.98	146.12
16	E4a_E5a	KnownJunction	0	245.44	151.38	57.28	19.45	297.54	37.44	147.46
17	ER5a	ExonRegion	0	377.46	204.21	84.81	21.89	376.49	39.29	193.75
18	E5a_E6a	KnownJunction	0	455.32	203.45	97.46	18.48	455.85	28.38	176.71
19	ER6a	ExonRegion	0	505.38	184.23	88.87	27.24	640.83	36.56	191.85
20	E6a_E7a	KnownJunction	0	496.38	152.95	60.02	17.74	557.21	44.62	184.78
21	ER7a	ExonRegion	0	540.81	137.30	74.74	16.44	500.36	37.12	194.99
22	E7a_E8a	KnownJunction	0	529.76	136.98	69.94	21.75	435.19	21.92	153.43
23	ER8a	ExonRegion	0	751.60	151.93	103.23	16.11	661.44	37.60	201.53
24	E8a_E9a	KnownJunction	0	1000.04	156.05	135.20	20.07	757.61	32.11	223.34
25	E8a_E10a	NovelJunction	0	8.76	10.67	1.31	1.33	0.00	2.68	0.89
26	ER9a	ExonRegion	0	629.97	133.40	85.27	15.24	562.65	28.51	146.70
27	E9a_E10a	KnownJunction	1	808.04	129.10	100.85	18.18	663.97	20.64	149.48
28	ER10a	ExonRegion	0	484.55	141.02	83.28	15.72	438.18	31.86	149.98
29	E10a_E11a	KnownJunction	1	257.33	147.17	54.55	8.94	330.02	19.78	122.93
30	ER11a	ExonRegion	0	452.81	155.46	74.80	14.76	409.03	31.83	142.29
31	E11a_E12a	KnownJunction	1	241.97	141.94	51.62	7.61	286.98	26.00	134.96
32	E12_Aa	NovelBoundary	1	88.96	2.18	21.21	0.00	1.98	1.13	0.00
33	ER12a	ExonRegion	0	296.45	142.90	54.07	18.87	259.84	35.70	132.99
34	E12a_E13a	KnownJunction	0	317.19	143.13	58.40	21.02	262.43	34.09	114.01
35	ER13a	ExonRegion	0	263.39	130.84	54.53	16.10	251.22	27.33	115.60
36	E13a_E14a	KnownJunction	0	222.94	125.34	44.98	14.52	217.90	24.76	123.91
37	ER14a	ExonRegion	0	143.26	92.60	24.10	8.19	144.07	16.30	77.94
38	E14a_E15a	KnownJunction	1	95.63	84.83	24.80	3.77	136.03	13.05	73.99
39	I14	Intron	0	40.80	20.26	4.23	2.04	7.29	4.13	3.88
40	I14_AR1	ActiveIntronRegion	0	18.10	18.38	2.05	0.84	3.45	3.03	1.59
41	I14_AR2	ActiveIntronRegion	0	50.75	25.00	6.19	1.77	6.42	3.83	3.32
42	I14_SR3	SilentIntronRegion	0	43.66	32.20	7.34	2.09	7.85	5.71	1.43
43	I14_AR3	ActiveIntronRegion	0	39.55	21.00	4.82	1.22	5.72	3.02	2.85
44	I14_AR4	ActiveIntronRegion	1	59.43	29.28	8.29	0.95	9.52	4.66	4.01
45	I14_SR5	SilentIntronRegion	1	59.07	26.36	5.58	1.23	14.35	3.06	0.75
46	I14_AR5	ActiveIntronRegion	1	68.94	29.67	6.94	3.58	9.54	8.27	5.03
47	I14_AR6	ActiveIntronRegion	1	65.56	20.29	5.23	2.14	7.13	4.96	3.55
48	I14_SR6	SilentIntronRegion	0	26.05	20.29	2.95	2.41	4.85	4.42	3.34
49	I14_AR7	ActiveIntronRegion	1	56.75	23.74	6.67	4.60	7.23	0.75	10.53
50	I14_AR8	ActiveIntronRegion	0	59.21	20.49	4.16	1.03	5.91	2.75	5.69
51	I14_SR7	SilentIntronRegion	0	41.26	18.16	3.02	1.87	8.27	2.71	3.77
52	I14_AR10	ActiveIntronRegion	0	38.34	22.16	4.08	2.77	8.78	4.52	5.72
53	ER15a	ExonRegion	1	172.17	99.99	32.60	5.70	204.94	16.12	105.98
54	E15a_E16a	KnownJunction	1	345.78	112.26	53.04	2.63	329.84	24.15	123.14
55	ER16a	ExonRegion	1	427.84	104.59	63.43	8.70	449.55	29.21	149.30
56	E16a_E17a	KnownJunction	1	531.92	144.05	78.75	12.90	515.60	42.24	182.68
57	ER17a	ExonRegion	1	764.30	157.51	109.26	13.17	543.37	52.42	217.34
58	E17a_E18a	KnownJunction	1	699.02	155.97	108.31	14.93	636.83	56.09	201.87
59	ER18a	ExonRegion	0	576.73	120.36	90.59	13.89	621.70	38.42	222.76
60	E18a_E19a	KnownJunction	0	1.95	0.00	0.86	0.00	0.00	0.00	0.00
61	E18a_E20a	KnownJunction	0	504.50	90.85	75.34	15.44	475.67	32.19	210.59
62	E19_Aa	NovelBoundary	0	6673.25	3957.37	5719.90	3303.98	3670.59	3258.58	3653.55
63	ER19a	ExonRegion	0	4.64	0.02	3.60	0.00	12.57	0.00	0.02
64	E19_Da	NovelBoundary	1	1083.79	774.95	793.86	692.48	285.69	1434.06	599.48
65	ER20a	ExonRegion	0	228.39	84.01	38.98	10.15	288.49	26.79	129.58
66	E20a_E21a	KnownJunction	0	107.33	44.56	17.42	7.50	196.39	16.51	80.00
67	I20_AR3	ActiveIntronRegion	0	9.62	10.83	3.64	11.05	2.36	4.92	10.19
68	E21_Aa	NovelBoundary	0	8.80	11.32	8.79	14.82	3.32	13.59	26.84
69	ER21a	ExonRegion	0	187.01	99.13	36.84	29.80	254.77	26.34	137.31
70	E21_Da	NovelBoundary	1	30.76	37.07	8.54	39.31	11.53	28.35	37.23
71	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	6.20	0.00	0.00
72	E21a_E23a	KnownJunction	1	173.09	81.49	24.62	3.71	220.85	12.14	109.96
73	I21	Intron	1	25.69	19.58	11.88	10.76	7.29	7.31	32.48
74	I21_AR1	ActiveIntronRegion	1	19.79	19.90	8.89	9.66	7.34	9.49	32.16
75	I21_SR1	SilentIntronRegion	1	23.27	17.19	9.85	6.02	6.35	4.73	32.51
76	I21_AR2	ActiveIntronRegion	1	30.69	20.97	14.92	14.48	7.89	7.74	32.68
77	E22_Aa	NovelBoundary	1	48.75	34.47	17.22	12.25	8.92	11.44	54.16
78	ER22a	ExonRegion	0	5.62	10.86	2.44	6.95	12.27	2.00	11.90
79	E22_Da	NovelBoundary	1	24.80	38.72	18.08	11.84	9.43	17.85	48.21
80	E22a_E23a	KnownJunction	0	1.90	0.00	0.53	0.00	8.18	0.00	0.00
81	I22	Intron	1	15.57	16.67	8.89	14.83	4.59	4.98	25.19
82	I22_SR1	SilentIntronRegion	1	14.49	15.66	9.30	15.63	4.13	6.77	29.06
83	I22_AR1	ActiveIntronRegion	1	17.73	22.77	10.82	19.36	6.19	5.56	28.41
84	E23_Aa	NovelBoundary	0	20.33	18.36	6.14	8.91	5.53	7.64	23.27
85	ER23a	ExonRegion	0	173.41	80.83	34.52	7.37	298.45	12.24	124.24
86	E23_Da	NovelBoundary	1	15.17	13.61	5.66	11.43	0.00	3.03	27.80
87	E23a_E24a	KnownJunction	0	169.90	88.64	40.15	10.48	325.74	16.27	134.67
88	I23	Intron	1	7.14	12.59	3.41	7.27	1.24	3.18	25.71
89	I23_SR1	SilentIntronRegion	1	7.19	12.69	3.43	7.33	1.25	3.20	25.90
90	E24_Aa	NovelBoundary	0	8.34	16.45	7.99	8.45	0.95	6.11	26.56
91	ER24a	ExonRegion	0	173.09	85.35	34.61	11.29	205.95	23.40	137.50
92	E24_Da	NovelBoundary	1	9.83	17.89	4.91	15.85	0.00	5.84	42.42
93	E24a_E25a	KnownJunction	1	145.47	62.42	26.60	4.85	139.15	20.45	115.38
94	I24	Intron	1	6.25	16.65	6.59	12.88	0.53	4.87	21.91
95	I24_SR1	SilentIntronRegion	1	6.27	16.69	6.60	12.91	0.53	4.88	21.96
96	E25_Aa	NovelBoundary	0	3.91	17.47	6.19	14.66	0.00	9.09	18.36
97	ER25a	ExonRegion	1	87.11	54.71	14.05	9.57	126.58	12.20	78.81
98	E25_Da	NovelBoundary	0	6.76	10.46	5.30	10.21	0.00	3.08	17.99
99	E25a_E26a	KnownJunction	0	81.56	48.44	17.98	8.67	117.27	5.57	71.79
100	E26_Aa	NovelBoundary	1	41.07	13.63	12.95	5.15	0.00	6.16	24.49
101	ER26a	ExonRegion	0	106.51	59.67	28.63	15.77	176.90	17.72	114.73
102	E26a_E27a	KnownJunction	1	101.47	37.44	27.46	5.20	204.52	18.89	96.48
103	I26	Intron	1	10.38	12.09	6.22	9.80	0.85	2.99	24.76
104	I26_SR1	SilentIntronRegion	1	11.13	12.71	7.01	10.91	1.00	3.26	26.67
105	E27_Aa	NovelBoundary	1	11.70	17.37	5.68	14.85	0.00	5.01	32.85
106	ER27a	ExonRegion	0	218.19	76.98	45.79	19.65	371.62	26.90	143.56
107	E27_Da	NovelBoundary	1	10.68	19.57	5.14	17.39	0.00	1.66	17.74
108	E27a_E28a	KnownJunction	0	225.93	87.06	46.29	20.45	342.57	27.20	152.69
109	I27	Intron	1	12.04	17.52	8.09	11.81	0.81	5.09	25.54
110	I27_SR1	SilentIntronRegion	1	13.25	19.16	8.58	12.36	0.81	5.67	27.93
111	I27_AR1	ActiveIntronRegion	0	5.75	9.79	6.51	9.09	1.18	2.19	14.55
112	I27_SR3	SilentIntronRegion	1	4.51	6.05	3.78	8.60	0.20	1.34	8.44
113	ER28a	ExonRegion	0	333.62	121.53	63.58	21.59	412.91	34.24	183.93
114	E28_Da	NovelBoundary	1	3.09	13.35	4.20	12.92	0.97	1.29	10.61
115	E28a_E29a	KnownJunction	0	389.73	147.09	73.73	25.82	384.77	36.37	257.66
116	E29_Aa	NovelBoundary	0	124.64	16.76	31.03	6.23	2.03	4.26	18.89
117	ER29a	ExonRegion	0	289.89	150.03	62.41	30.35	525.81	35.18	188.93
118	E29_Da	NovelBoundary	0	8.55	14.76	5.06	10.97	5.49	7.18	20.16
119	E29a_E30a	KnownJunction	0	307.41	129.65	54.19	19.56	528.60	35.99	162.93
120	I29	Intron	0	4.86	10.56	3.70	9.56	3.93	2.01	14.33
121	I29_AR1	ActiveIntronRegion	0	5.38	11.15	3.97	12.67	4.39	3.07	13.05
122	E30_Aa	NovelBoundary	0	8.81	11.40	10.16	12.33	6.29	5.25	14.16
123	ER30a	ExonRegion	0	243.91	53.34	48.81	17.16	347.86	16.95	74.59
124	IG4	Intergenic	0	6.62	8.17	5.69	3.40	0.59	1.79	12.26
125	IG4_SR1	SilentIntergenicRegion	0	6.83	8.43	5.87	3.51	0.61	1.84	12.63