Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UGCGL2	Gene	0	54.95	29.21	126.40	59.22	54.55	51.36	82.70
2	397618	Transcript	0	0	0	0	0	0	0	0
3	376712	Transcript	0	0.64	2.12	1.62	6.84	1.26	1.93	1.25
4	376714	Transcript	0	0.17	0.45	0.75	0.00	0.00	0.82	0.00
5	376722	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	376747	Transcript	0	0	0	0	0	0	0	0
7	376723	Transcript	0	2.95	2.73	4.70	2.89	1.30	4.29	3.18
8	ER1a	ExonRegion	0	12.82	31.95	20.19	47.01	12.67	27.63	22.86
9	E1a_E2a	KnownJunction	0	56.98	55.72	107.96	106.85	59.98	84.63	71.44
10	ER2a	ExonRegion	0	63.46	62.85	139.26	112.90	92.13	102.53	71.56
11	E2a_E3a	KnownJunction	0	69.61	70.75	165.56	137.60	68.40	110.98	72.50
12	ER3a	ExonRegion	0	68.73	83.92	162.39	155.30	63.99	119.17	89.88
13	E3a_E4a	KnownJunction	0	67.21	64.81	169.17	153.47	94.63	107.39	93.80
14	ER4a	ExonRegion	0	64.36	69.43	148.30	122.96	90.82	93.76	90.23
15	E4a_E5a	KnownJunction	0	68.08	66.02	158.36	110.13	99.43	92.97	98.00
16	ER5a	ExonRegion	0	102.38	113.92	203.18	203.17	121.36	151.86	126.68
17	E5_Da	NovelBoundary	0	6.44	11.72	13.11	8.67	6.13	2.68	0.64
18	E5a_E6a	KnownJunction	0	101.39	116.12	192.38	192.97	124.97	123.06	132.69
19	E5a_E7a	NovelJunction	0	3.87	2.86	9.79	10.27	1.13	5.33	0.75
20	E5a_E14a	NovelJunction	1	3.50	3.02	5.96	16.23	1.18	6.30	7.54
21	E5a_E16a	NovelJunction	1	5.27	1.05	4.22	18.72	3.25	5.60	1.45
22	ER6a	ExonRegion	0	75.65	98.47	172.72	143.14	121.54	109.47	110.52
23	E6a_E7a	KnownJunction	0	69.61	89.24	165.04	103.43	124.51	82.60	100.76
24	ER7a	ExonRegion	0	63.11	61.26	159.70	95.21	93.59	73.76	99.64
25	E7_Da	NovelBoundary	0	3.20	11.74	6.06	4.98	6.45	10.37	2.92
26	E7a_E8a	KnownJunction	0	58.28	34.99	130.32	63.12	74.83	54.32	71.93
27	E7a_E10a	NovelJunction	0	5.22	2.68	9.59	12.52	3.34	4.66	0.00
28	E8_Aa	NovelBoundary	1	6.94	13.87	7.01	8.56	5.35	1.63	1.73
29	ER8a	ExonRegion	0	50.17	45.01	128.64	67.76	76.05	56.30	94.86
30	E8a_E9a	KnownJunction	0	0.00	4.44	3.28	11.59	0.00	1.66	1.62
31	E8a_E10a	KnownJunction	0	43.96	33.52	129.94	51.18	77.23	59.58	93.31
32	ER9a	ExonRegion	0	1.92	1.93	1.60	7.48	3.77	3.10	1.57
33	E9_Da	NovelBoundary	0	5.04	11.80	9.44	14.47	7.35	4.64	3.67
34	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	1.44	0.00	1.05	0.57
35	I9	Intron	0	7.51	9.21	7.51	8.02	10.93	4.46	2.96
36	I9_SR1	SilentIntronRegion	0	7.83	7.35	9.02	7.57	12.09	4.77	4.09
37	I9_AR1	ActiveIntronRegion	0	11.50	10.09	8.67	9.08	12.42	5.29	4.80
38	I9_SR2	SilentIntronRegion	0	4.13	12.05	7.40	6.30	12.99	4.14	4.39
39	I9_AR2	ActiveIntronRegion	0	5.45	8.74	7.00	7.34	9.96	2.69	1.17
40	I9_SR3	SilentIntronRegion	0	6.98	8.86	6.38	8.50	9.36	5.11	1.92
41	E10_Aa	NovelBoundary	0	7.23	12.58	12.07	5.77	10.10	17.50	2.97
42	ER10a	ExonRegion	0	66.21	42.34	161.12	62.14	75.94	75.46	88.90
43	E10a_E11a	KnownJunction	0	13.12	20.68	15.58	36.90	30.13	35.16	21.48
44	E10a_E12a	KnownJunction	0	67.69	13.85	124.84	26.25	39.28	21.31	66.45
45	I10_AR2	ActiveIntronRegion	0	4.20	7.82	4.86	7.83	10.08	6.53	3.13
46	E11_Aa	NovelBoundary	0	5.62	11.85	7.70	10.86	5.67	2.47	2.32
47	ER11a	ExonRegion	0	6.43	14.58	15.26	23.08	24.14	20.08	18.37
48	E11_Da	NovelBoundary	0	9.28	23.78	19.57	21.27	26.65	36.80	20.24
49	I11_AR1	ActiveIntronRegion	0	4.66	11.66	6.22	15.07	10.45	19.22	8.19
50	E12_Aa	NovelBoundary	1	38.67	1.63	58.23	1.30	1.80	1.66	1.36
51	ER12a	ExonRegion	0	73.97	21.13	158.74	24.84	37.69	31.65	73.69
52	E12a_E14a	KnownJunction	0	60.38	25.04	170.82	28.07	41.26	33.90	65.49
53	ER13a	ExonRegion	0	0.17	0.45	0.75	0.00	0.00	0.82	0.00
54	ER14a	ExonRegion	0	59.12	33.74	155.25	31.34	34.74	33.16	68.33
55	E14a_E15a	KnownJunction	0	72.08	31.26	129.45	42.83	33.56	35.67	59.03
56	ER15a	ExonRegion	0	71.26	24.18	172.39	37.33	48.55	35.93	74.74
57	E15a_E16a	KnownJunction	0	48.00	19.07	131.83	36.22	33.61	28.11	54.57
58	ER16a	ExonRegion	0	66.74	22.24	157.76	56.35	47.84	39.49	77.30
59	E16a_E17a	KnownJunction	0	80.26	30.00	186.86	59.11	46.52	33.45	76.83
60	ER17a	ExonRegion	0	75.10	19.85	151.98	54.23	38.32	33.62	69.26
61	E17a_E18a	KnownJunction	1	80.83	18.52	128.01	46.19	40.71	18.81	55.68
62	ER18a	ExonRegion	0	66.58	13.47	131.73	48.64	41.60	24.88	55.95
63	E18a_E19a	KnownJunction	1	60.15	6.78	134.74	55.54	33.59	31.81	73.49
64	ER19a	ExonRegion	0	63.43	22.99	150.66	59.18	44.22	44.45	88.59
65	E19a_E20a	KnownJunction	0	47.05	21.38	146.39	47.14	43.59	40.63	102.10
66	ER20a	ExonRegion	0	43.52	24.09	124.78	41.23	38.95	33.64	82.96
67	E20a_E21a	KnownJunction	0	37.62	11.40	98.41	28.96	28.68	15.81	78.46
68	E21_Aa	NovelBoundary	1	15.62	1.37	44.94	6.99	5.39	0.00	2.15
69	ER21a	ExonRegion	0	42.83	14.42	113.84	35.72	37.83	27.11	78.10
70	E21a_E22a	KnownJunction	0	40.17	13.85	120.70	35.84	35.80	27.04	53.61
71	E22_Aa	NovelBoundary	1	21.81	0.00	46.16	0.00	0.00	0.00	2.08
72	ER22a	ExonRegion	0	59.19	19.52	134.59	43.96	37.38	33.61	68.96
73	E22a_E23a	KnownJunction	0	65.29	11.53	128.97	39.77	39.01	33.77	70.55
74	ER23a	ExonRegion	0	71.27	21.53	151.38	51.11	50.59	39.43	62.64
75	E23_Da	NovelBoundary	0	3.35	10.32	4.83	1.35	2.17	3.27	7.02
76	E23a_E24a	KnownJunction	1	72.99	9.14	167.16	51.50	61.02	35.67	53.40
77	ER24a	ExonRegion	0	54.83	17.19	135.84	36.60	33.30	29.20	65.96
78	E24a_E25a	KnownJunction	0	35.97	8.38	112.94	19.80	37.28	17.90	64.82
79	E24a_E26a	NovelJunction	0	3.32	2.71	20.39	10.51	4.45	2.20	0.00
80	ER25a	ExonRegion	0	34.22	9.32	102.13	21.72	34.43	20.08	62.56
81	E25_Da	NovelBoundary	0	7.06	8.04	23.11	4.55	2.90	5.65	8.38
82	E25a_E26a	KnownJunction	1	40.79	6.17	76.58	31.53	29.65	16.51	54.45
83	I25	Intron	0	11.88	2.57	27.73	3.70	6.47	3.04	8.23
84	I25_SR1	SilentIntronRegion	0	11.88	2.57	27.75	3.70	6.47	3.04	8.23
85	ER26a	ExonRegion	0	74.22	24.06	172.91	46.28	60.70	40.78	109.17
86	E26a_E27a	KnownJunction	0	83.75	31.87	184.14	72.06	84.81	43.15	133.04
87	ER27a	ExonRegion	0	79.17	29.74	183.32	67.25	77.67	50.98	144.40
88	E27a_E28a	KnownJunction	1	92.65	14.03	153.60	59.60	66.44	42.91	145.48
89	ER28a	ExonRegion	0	78.78	20.69	168.23	68.30	85.49	50.75	163.70
90	E28a_E29a	KnownJunction	1	71.83	10.30	160.09	61.28	73.65	41.94	144.93
91	ER29a	ExonRegion	0	49.64	14.82	119.39	43.25	61.04	38.68	115.70
92	E29a_E31a	KnownJunction	0	33.68	13.77	75.56	34.60	40.37	23.26	91.05
93	ER30a	ExonRegion	0	2.09	2.43	2.80	2.52	0.53	2.63	1.84
94	E30a_E31a	KnownJunction	0	3.81	3.02	6.61	3.25	2.07	5.95	4.51
95	ER31a	ExonRegion	0	47.51	18.10	125.96	38.30	52.09	40.19	108.87
96	E31a_E32a	KnownJunction	1	36.15	11.45	94.14	37.79	38.73	15.20	83.67
97	ER32a	ExonRegion	0	53.62	18.83	130.09	54.24	52.85	37.90	97.74
98	E32a_E33a	KnownJunction	0	50.84	25.17	129.06	62.12	58.05	39.21	94.27
99	ER33a	ExonRegion	0	64.27	22.77	150.21	62.15	66.06	53.99	108.26
100	E33a_E34a	KnownJunction	0	62.27	21.44	164.01	51.58	69.83	56.04	111.91
101	ER34a	ExonRegion	0	62.04	18.98	139.22	53.72	62.38	46.69	106.83
102	E34a_E35a	KnownJunction	0	56.14	13.45	122.94	35.14	41.86	46.34	89.56
103	ER35a	ExonRegion	0	71.35	17.12	149.07	40.22	68.75	38.62	96.57
104	E35a_E36a	KnownJunction	0	92.95	14.58	151.94	35.46	59.45	39.80	97.35
105	E35a_E37a	NovelJunction	1	2.17	0.00	12.36	5.66	2.33	9.22	8.90
106	I35	Intron	0	8.77	3.16	20.16	4.07	14.03	3.01	7.88
107	I35_SR1	SilentIntronRegion	0	3.60	1.23	10.52	2.46	11.46	2.33	5.30
108	I35_AR2	ActiveIntronRegion	0	11.11	4.24	24.31	5.04	15.79	3.54	9.27
109	ER36a	ExonRegion	0	83.42	16.96	150.05	49.66	66.74	57.05	94.31
110	E36a_E37a	KnownJunction	1	78.36	14.50	154.25	53.29	43.02	56.84	75.05
111	ER37a	ExonRegion	1	82.70	16.97	164.60	46.09	72.37	59.54	103.36
112	E37a_E38a	KnownJunction	0	59.53	18.21	119.06	25.55	61.21	39.74	81.24
113	ER38a	ExonRegion	0	49.00	18.57	112.28	36.95	58.44	50.26	93.45
114	E38a_E39a	KnownJunction	0	41.42	22.25	88.42	45.62	75.71	69.12	90.65
115	ER39a	ExonRegion	0	59.77	25.50	138.46	54.36	83.65	79.58	115.74
116	E39a_E40a	KnownJunction	0	68.04	25.06	160.99	70.84	90.11	80.61	110.42
117	ER40a	ExonRegion	0	74.46	26.47	152.91	80.10	85.98	82.74	118.75
118	E40a_E41a	KnownJunction	0	55.31	21.75	117.58	57.43	57.54	63.81	84.47
119	ER41a	ExonRegion	0	53.77	25.08	116.42	73.81	65.79	67.46	102.96
120	E41a_E42a	KnownJunction	1	43.86	17.37	104.27	72.74	61.41	67.32	97.55
121	ER42a	ExonRegion	1	38.23	17.25	94.77	72.19	41.68	77.05	83.12
122	E42a_E44a	KnownJunction	1	25.72	7.70	53.67	35.33	33.03	58.93	59.40
123	ER43a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
124	ER44a	ExonRegion	1	9.44	7.31	31.34	19.96	11.76	28.59	25.58
125	IG39	Intergenic	0	110.50	138.05	78.59	189.11	28.59	260.81	70.13
126	IG39_AR5	ActiveIntergenicRegion	0	5.35	7.48	4.49	13.52	0.92	8.24	3.61
127	IG39_AR2	ActiveIntergenicRegion	0	264.68	338.99	187.96	529.42	70.93	852.86	162.44
128	IG39_AR1	ActiveIntergenicRegion	0	294.89	365.61	206.54	462.45	75.06	570.34	186.65