Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	XXyac-R12DG2.2	Gene	0	450.45	853.36	54.55	142.04	18.40	131.53	30.05
2	400416	Transcript	0	85.20	174.04	19.11	47.43	9.42	40.62	12.13
3	405697	Transcript	0	548.71	750.13	61.30	82.53	15.29	99.06	39.81
4	330825	Transcript	0	38.24	61.82	3.95	8.50	0.66	7.73	1.43
5	379050	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.11	0.00	0.03	0.00	0.09	0.00	0.00
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	I1	Intron	1	7.49	8.07	12.35	9.62	8.06	4.94	8.30
9	I1_AR1	ActiveIntronRegion	1	7.77	9.52	13.46	12.30	8.41	5.90	8.60
10	I1_SR1	SilentIntronRegion	1	8.37	5.67	12.00	3.74	8.91	3.31	9.46
11	E2_Aa	NovelBoundary	0	5980.82	2528.13	8303.14	1964.10	3278.37	2328.60	3168.36
12	ER2a	ExonRegion	1	20.69	8.05	17.01	7.34	36.03	11.28	3.98
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E3_Aa	NovelBoundary	0	553.24	378.33	403.73	275.81	235.39	255.80	301.35
15	ER3a	ExonRegion	0	1.85	7.00	3.14	7.15	16.61	7.46	1.49
16	E3_Da	NovelBoundary	0	10.08	5.02	10.71	0.00	3.99	2.84	10.85
17	E3a_E4a	KnownJunction	0	0.83	11.77	4.60	10.16	0.00	18.76	2.72
18	I3	Intron	1	5.52	5.48	5.11	5.09	8.63	2.42	8.97
19	I3_AR1	ActiveIntronRegion	1	10.10	3.16	8.45	5.23	10.77	2.45	8.52
20	I3_SR2	SilentIntronRegion	1	7.19	3.31	6.35	3.19	8.50	0.74	8.05
21	I3_AR2	ActiveIntronRegion	1	4.24	8.40	7.61	3.79	7.29	3.82	11.84
22	I3_SR3	SilentIntronRegion	1	5.42	8.57	5.88	3.81	7.84	4.77	8.81
23	I3_AR3	ActiveIntronRegion	1	10.79	8.25	7.94	5.68	13.84	4.36	11.39
24	I3_SR5	SilentIntronRegion	1	5.65	4.97	4.40	3.45	9.49	1.95	7.88
25	I3_AR4	ActiveIntronRegion	1	7.81	10.73	9.12	3.75	13.22	2.72	14.09
26	I3_AR5	ActiveIntronRegion	1	6.92	15.62	7.45	5.34	14.35	1.23	24.38
27	I3_SR6	SilentIntronRegion	1	5.26	11.56	6.96	6.54	17.01	1.23	23.57
28	I3_AR6	ActiveIntronRegion	1	3.80	9.31	6.46	5.01	7.09	0.47	11.44
29	I3_SR7	SilentIntronRegion	0	5.32	5.60	3.15	5.50	7.79	2.43	7.07
30	I3_AR7	ActiveIntronRegion	1	4.52	5.39	6.95	10.58	8.50	4.39	14.11
31	I3_AR8	ActiveIntronRegion	1	5.38	5.61	6.11	8.66	8.92	3.43	12.69
32	I3_AR12	ActiveIntronRegion	1	2.84	13.96	3.80	31.02	4.94	13.51	11.43
33	E4_Aa	NovelBoundary	1	13.19	37.12	19.10	98.34	13.21	45.05	30.94
34	ER4a	ExonRegion	0	10.89	40.86	23.64	82.26	13.74	58.16	28.99
35	E4_Da	NovelBoundary	0	5.41	5.33	5.20	10.35	9.57	2.73	11.61
36	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E4a_E8a	NovelJunction	1	5.09	4.57	8.81	23.70	3.32	12.44	11.82
38	I4	Intron	1	6.27	7.27	6.47	7.14	6.21	3.58	11.96
39	I4_SR1	SilentIntronRegion	1	7.39	5.26	8.24	5.45	6.71	2.41	7.51
40	I4_AR2	ActiveIntronRegion	1	3.97	4.67	3.38	7.53	3.95	5.04	8.33
41	I4_SR3	SilentIntronRegion	1	6.63	6.98	7.41	7.96	6.69	3.54	14.06
42	I4_AR3	ActiveIntronRegion	1	4.81	8.55	5.50	7.03	5.26	3.71	12.49
43	I4_SR4	SilentIntronRegion	1	7.84	9.51	5.57	4.68	6.92	3.01	8.05
44	ER5a	ExonRegion	1	193.65	582.91	59.91	169.47	23.43	131.07	36.31
45	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E6_Ab	NovelBoundary	0	3694.03	5852.51	428.91	842.10	104.87	853.25	234.73
47	ER6a	ExonRegion	0	519.64	848.40	95.12	192.15	19.59	177.10	61.17
48	ER6b	ExonRegion	0	813.95	2276.73	131.50	228.15	44.10	335.16	99.65
49	E6_Da	NovelBoundary	1	56.23	445.64	11.68	93.25	9.87	71.61	15.09
50	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER7a	ExonRegion	0	772.13	2280.41	96.68	193.70	24.26	318.97	58.12
52	E7_Da	NovelBoundary	1	205.42	416.95	24.83	15.39	3.34	15.68	6.79
53	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E8_Aa	NovelBoundary	1	2099.26	2452.65	164.22	649.48	64.32	266.71	32.83
55	ER8a	ExonRegion	0	884.00	2510.71	116.40	279.42	30.48	396.69	85.34
56	E8_Da	NovelBoundary	1	295.04	574.71	27.68	45.00	1.06	23.64	3.94
57	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER9a	ExonRegion	0	1459.06	2441.34	150.99	438.22	54.80	310.52	72.60
59	E9_Da	NovelBoundary	1	335.17	425.89	26.50	40.39	0.00	22.40	3.75
60	E9a_E10a	KnownJunction	0	447.04	655.60	56.14	60.06	16.53	94.82	43.18
61	E9a_E11b	KnownJunction	0	274.75	589.48	25.84	100.59	3.53	83.64	10.85
62	E9a_E12a	NovelJunction	0	9.20	132.38	1.77	13.74	0.00	10.24	0.00
63	E9a_E13a	NovelJunction	0	8.18	293.11	3.03	70.71	0.00	33.85	0.00
64	ER10a	ExonRegion	0	534.63	804.30	55.23	84.11	11.72	97.21	41.18
65	E10_Da	NovelBoundary	0	818.11	3715.18	70.50	367.95	8.48	482.85	77.68
66	E10a_E11b	KnownJunction	0	664.46	790.48	72.54	103.41	17.64	105.16	35.07
67	E10a_E12a	NovelJunction	1	6.34	63.18	0.00	0.00	0.00	13.45	0.00
68	E10a_E13a	NovelJunction	0	9.73	60.35	0.00	10.54	0.00	9.65	0.00
69	I10	Intron	1	191.64	203.17	13.71	15.62	3.69	15.53	3.32
70	I10_SR1	SilentIntronRegion	0	191.64	203.17	13.71	15.62	3.69	15.53	3.32
71	E11_Aa	NovelBoundary	0	1360.90	1057.79	987.80	778.90	1411.92	1006.09	753.92
72	ER11a	ExonRegion	0	38.24	61.82	3.95	8.50	0.66	7.73	1.43
73	E11_Ab	KnownBoundary	1	1511.01	1093.36	1100.21	819.23	918.40	1192.16	526.75
74	ER11b	ExonRegion	1	1852.40	2017.99	156.56	307.27	35.17	317.56	65.09
75	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	Ix	Intron	0	119.29	68.80	7.74	4.73	0.78	7.50	1.38
78	Ix_AR1	ActiveIntronRegion	0	119.67	69.04	7.76	4.75	0.78	7.53	1.39
79	ER12a	ExonRegion	0	188.31	211.58	25.24	44.87	9.52	41.05	12.07
80	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
81	ER13a	ExonRegion	1	163.07	283.27	12.52	73.19	2.78	41.96	3.53
82	E13_Da	KnownBoundary	0	66.56	141.63	10.00	40.18	3.07	23.85	3.71
83	E13_Db	KnownBoundary	1	187.76	181.25	14.26	65.48	6.92	43.01	3.50
84	ER13b	ExonRegion	1	313.14	416.70	32.51	126.57	14.17	74.17	9.44
85	ER13c	ExonRegion	1	401.82	516.21	37.97	169.42	6.93	84.45	9.51
86	IG19	Intergenic	0	163.60	283.08	20.03	90.24	4.30	39.90	7.83
87	IG19_AR1	ActiveIntergenicRegion	0	275.20	501.41	34.23	157.61	7.30	68.33	12.89
88	IG19_AR3	ActiveIntergenicRegion	0	67.22	91.57	7.70	31.38	1.71	15.20	3.50