Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C13orf34	Gene	0	12.90	8.32	8.64	6.38	72.04	10.86	12.62
2	377815	Transcript	0	0.00	0.00	0.00	0.00	0.07	2.02	0.61
3	377814	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.31	0.00
4	390667	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.07	2.02	0.61
6	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	2.79	0.75
7	E1_Ac	KnownBoundary	0	0.00	1.21	1.03	0.00	9.06	1.63	0.62
8	ER1b	ExonRegion	0	0.14	0.88	0.15	0.00	5.48	3.06	1.23
9	ER1c	ExonRegion	0	3.24	2.67	0.93	1.88	25.61	5.43	7.85
10	E1a_E2a	KnownJunction	0	2.15	2.52	0.62	2.38	14.87	5.92	2.62
11	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.31	0.00
12	ER2a	ExonRegion	0	5.19	3.00	2.72	2.70	35.07	4.90	6.44
13	E2a_E3a	KnownJunction	0	8.14	4.31	3.74	2.49	76.77	0.00	3.80
14	E2a_E4a	NovelJunction	0	0.00	2.36	1.52	1.03	16.46	0.00	2.45
15	E2a_E5a	NovelJunction	0	5.21	0.00	1.47	0.00	15.61	3.99	0.00
16	ER3a	ExonRegion	0	5.16	3.89	1.77	2.00	56.06	4.61	5.54
17	E3a_E4a	KnownJunction	0	2.87	5.31	0.88	1.54	49.96	3.32	2.94
18	ER4a	ExonRegion	0	4.96	4.41	2.14	0.70	55.47	3.49	4.08
19	E4a_E5a	KnownJunction	0	5.39	3.26	2.39	0.00	61.21	1.61	5.29
20	E5_Aa	NovelBoundary	1	3.09	0.00	1.24	6.69	0.00	19.78	2.04
21	ER5a	ExonRegion	0	10.63	7.79	3.29	0.78	71.38	8.10	11.20
22	E5a_E6a	KnownJunction	0	9.18	8.72	5.88	1.30	66.09	6.14	11.49
23	E6_Aa	NovelBoundary	1	8.06	4.05	2.51	9.43	0.00	16.91	1.73
24	ER6a	ExonRegion	0	10.25	7.33	7.47	1.62	71.45	5.85	9.97
25	E6a_E7a	KnownJunction	0	9.21	5.91	7.27	1.22	86.98	4.40	9.77
26	E7_Aa	NovelBoundary	1	2.39	1.63	5.42	6.69	0.00	12.84	0.89
27	ER7a	ExonRegion	0	10.11	6.61	5.17	0.74	76.42	5.61	12.98
28	E7_Da	NovelBoundary	0	10.98	6.07	5.76	3.09	0.00	1.66	2.75
29	E7a_E8a	KnownJunction	0	11.07	5.52	5.03	1.38	66.23	6.03	12.10
30	E8_Aa	NovelBoundary	0	5.87	6.04	3.77	3.12	0.00	8.84	1.66
31	ER8a	ExonRegion	0	15.08	11.78	9.61	3.08	89.34	10.07	13.76
32	E8_Da	NovelBoundary	0	8.13	7.30	9.13	2.71	7.42	7.80	3.01
33	E8a_E9a	KnownJunction	0	19.11	6.41	6.31	2.93	76.05	8.31	12.71
34	ER9a	ExonRegion	0	19.75	9.00	12.26	2.51	97.49	8.52	13.99
35	E9_Da	NovelBoundary	0	4.24	2.52	6.27	5.07	2.35	8.87	1.61
36	E9a_E10a	KnownJunction	0	13.07	4.36	5.16	3.06	93.85	5.07	10.33
37	I9	Intron	0	5.32	3.57	6.72	5.12	1.16	10.79	2.25
38	I9_AR1	ActiveIntronRegion	0	5.74	3.87	7.56	5.43	1.09	12.23	2.56
39	E10_Aa	NovelBoundary	0	7.84	4.02	7.40	11.00	2.24	2.41	2.59
40	ER10a	ExonRegion	0	18.63	11.90	13.38	11.92	135.38	18.16	18.67
41	E10_Da	NovelBoundary	1	11.05	10.32	7.75	15.93	4.17	8.15	2.22
42	E10a_E11a	KnownJunction	0	25.02	5.28	5.86	5.99	173.98	8.87	12.64
43	I10	Intron	0	13.63	14.06	12.39	14.91	6.90	19.74	9.94
44	I10_SR1	SilentIntronRegion	0	2.73	3.52	4.02	8.45	1.44	8.24	2.93
45	I10_AR2	ActiveIntronRegion	0	11.77	6.27	10.12	9.65	2.82	15.10	4.01
46	I10_AR4	ActiveIntronRegion	0	17.92	20.35	16.03	19.76	9.74	25.93	14.16
47	E11_Aa	NovelBoundary	1	33.61	16.13	27.39	23.76	10.21	24.66	10.85
48	ER11a	ExonRegion	0	32.50	18.09	20.91	11.36	203.30	21.75	29.74
49	E11_Da	NovelBoundary	0	24.68	20.99	30.55	14.49	4.36	24.76	11.84
50	E11a_E12a	KnownJunction	0	14.65	7.28	2.39	8.53	214.83	11.04	15.51
51	I11	Intron	1	14.96	11.54	15.18	15.33	6.34	20.56	15.68
52	I11_AR1	ActiveIntronRegion	1	4.57	3.64	12.49	4.23	3.01	10.49	13.15
53	I11_AR2	ActiveIntronRegion	1	9.22	7.42	21.92	8.46	4.14	20.45	19.44
54	I11_AR3	ActiveIntronRegion	1	17.61	17.26	19.72	19.35	7.50	20.22	20.38
55	I11_SR3	SilentIntronRegion	1	19.21	8.11	13.44	14.99	4.89	28.18	10.81
56	I11_AR6	ActiveIntronRegion	1	9.00	10.13	10.95	13.77	7.98	14.16	16.18
57	E12_Aa	NovelBoundary	0	29.21	38.86	11.61	36.03	9.43	36.53	27.70
58	ER12a	ExonRegion	0	10.47	6.98	7.63	6.99	28.93	9.61	10.26
59	ER12b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00