Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C13orf18	Gene	0	11.29	15.19	39.65	73.70	2.72	6.51	2.74
2	409879	Transcript	0	0.00	0.00	0.03	0.21	0.00	0.00	0.00
3	389908	Transcript	0	3.67	4.43	2.69	7.93	0.45	2.30	1.09
4	378781	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	378784	Transcript	1	0.80	1.63	14.10	2.87	0.00	0.00	0.00
6	378797	Transcript	0	0	0	0	0	0	0	0
7	378787	Transcript	0	4.62	14.74	7.65	27.52	1.98	4.69	0.89
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2a	ExonRegion	0	3.98	0.36	2.19	3.30	0.32	0.00	1.77
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	Ix	Intron	0	10.23	3.79	6.60	20.29	0.57	0.91	1.15
13	Ix_SR2	SilentIntronRegion	0	11.92	2.84	5.30	6.25	0.91	0.41	1.80
14	Ix_AR2	ActiveIntronRegion	0	10.89	5.43	8.97	34.89	0.38	1.46	0.83
15	Ix_SR1	SilentIntronRegion	0	2.40	2.38	4.90	30.32	0.00	1.23	0.00
16	ER3a	ExonRegion	0	3.66	4.33	4.62	11.82	0.06	1.21	0.07
17	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E3a_E6a	KnownJunction	0	7.04	12.93	5.86	20.48	1.04	6.91	1.50
19	Ix_SR2	SilentIntronRegion	0	4.44	7.60	4.84	8.82	0.00	0.00	1.42
20	E4_Aa	NovelBoundary	1	5.01	10.51	5.45	23.30	0.00	0.00	2.19
21	E4_Ab	NovelBoundary	0	2.69	10.22	1.93	9.02	0.00	0.00	0.54
22	ER4a	ExonRegion	0	0.10	1.05	1.31	2.24	0.00	0.00	0.00
23	ER4b	ExonRegion	0	6.75	16.84	23.99	84.70	1.64	10.64	0.74
24	E4a_E5a	KnownJunction	1	2.79	1.10	14.07	49.28	0.00	4.64	0.76
25	E4a_E6a	KnownJunction	0	4.62	14.74	7.65	27.52	1.98	4.69	0.89
26	E4a_E7a	NovelJunction	0	0.00	4.05	4.67	9.70	0.00	1.47	0.00
27	Ix	Intron	0	8.29	5.54	23.40	20.03	0.39	1.55	1.85
28	Ix_SR7	SilentIntronRegion	0	4.02	12.67	13.80	21.51	0.19	2.48	2.45
29	Ix_AR8	ActiveIntronRegion	0	10.16	26.08	28.52	108.47	0.63	10.02	2.36
30	Ix_SR6	SilentIntronRegion	0	9.97	19.53	22.66	90.61	0.00	8.36	1.34
31	Ix_AR7	ActiveIntronRegion	0	10.26	27.78	28.66	80.20	0.45	5.28	1.12
32	Ix_SR5	SilentIntronRegion	0	6.66	6.64	16.63	21.72	0.55	1.71	1.12
33	Ix_AR6	ActiveIntronRegion	0	5.24	8.78	17.58	16.69	1.42	1.25	3.36
34	Ix_SR4	SilentIntronRegion	0	9.80	4.00	18.43	12.20	0.09	1.11	1.81
35	Ix_AR5	ActiveIntronRegion	0	9.33	2.82	29.52	13.19	0.30	1.71	1.62
36	Ix_SR3	SilentIntronRegion	0	6.48	2.81	18.82	9.37	0.34	0.39	1.07
37	Ix_AR4	ActiveIntronRegion	0	10.21	4.35	24.78	17.74	0.37	1.10	2.49
38	Ix_SR2	SilentIntronRegion	0	10.90	3.64	30.27	16.11	0.44	0.94	2.13
39	Ix_AR2	ActiveIntronRegion	0	4.64	3.68	24.86	24.39	0.73	0.47	3.03
40	Ix_SR1	SilentIntronRegion	0	5.51	3.88	28.23	22.76	0.54	0.00	4.11
41	ER5a	ExonRegion	0	11.90	19.98	75.15	109.93	1.49	14.60	3.90
42	E5a_E6a	KnownJunction	0	23.87	24.56	129.16	152.28	3.23	18.49	8.81
43	E5a_E6b	KnownJunction	1	0.80	1.63	14.10	2.87	0.00	0.00	0.00
44	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	Ix_SR3	SilentIntronRegion	0	8.39	4.38	13.09	8.76	0.62	0.29	1.07
46	Ix_AR2	ActiveIntronRegion	0	16.15	5.84	20.20	14.51	0.62	0.00	2.58
47	Ix	Intron	0	4.20	3.48	13.06	8.36	0.48	0.11	1.32
48	Ix_SR1	SilentIntronRegion	0	4.20	3.49	13.09	8.38	0.48	0.11	1.33
49	E6_Aa	NovelBoundary	0	5.54	2.50	19.74	6.29	0.97	0.00	2.04
50	ER6a	ExonRegion	0	44.14	82.86	181.45	407.68	12.21	37.48	13.20
51	E6_Ab	KnownBoundary	0	34.80	55.28	135.14	297.46	6.22	28.51	13.27
52	ER6b	ExonRegion	0	59.49	65.82	188.97	373.63	11.40	27.34	14.22
53	E6_Da	NovelBoundary	1	6.99	0.00	10.85	30.42	0.00	1.02	0.89
54	E6a_E7a	KnownJunction	0	91.14	95.34	268.27	441.15	7.68	28.06	15.81
55	Ix_AR1	ActiveIntronRegion	0	3.15	3.43	15.57	22.06	0.27	2.47	0.00
56	ER7a	ExonRegion	0	66.84	68.79	199.40	270.62	11.33	21.99	11.74
57	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	Ix	Intron	0	17.37	7.98	94.95	58.45	0.46	1.04	0.72
59	Ix_SR2	SilentIntronRegion	0	8.03	3.71	17.43	17.42	0.00	0.97	0.00
60	Ix_AR1	ActiveIntronRegion	0	17.50	9.76	64.74	45.27	0.00	1.00	0.51
61	Ix_SR1	SilentIntronRegion	0	22.13	9.57	144.75	83.89	0.86	1.11	1.15
62	ER8a	ExonRegion	0	10.54	9.67	35.28	33.78	4.77	2.61	3.81
63	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E8b_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER8b	ExonRegion	0	0.00	0.00	0.17	1.25	0.00	0.00	0.00
66	ER9a	ExonRegion	0	0.77	2.43	0.14	4.99	0.00	0.00	1.35
67	ER9b	ExonRegion	0	0.78	2.71	3.70	12.55	0.00	1.11	0.72
68	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER10a	ExonRegion	0	0.00	0.48	0.08	0.00	0.00	0.00	0.00
71	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER11a	ExonRegion	0	0.65	2.34	2.02	11.94	0.00	0.88	0.32
73	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER12a	ExonRegion	0	0.27	0.47	1.48	3.05	0.00	0.40	0.00
75	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	ER13a	ExonRegion	0	0.00	0.00	0.00	2.23	0.00	0.00	0.00
77	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	Ix	Intron	0	9.91	7.95	16.93	26.25	0.71	2.24	0.46
79	Ix_AR4	ActiveIntronRegion	0	6.67	18.88	19.68	43.06	1.82	2.28	1.25
80	Ix_SR2	SilentIntronRegion	0	14.82	14.45	27.56	36.13	0.56	3.77	0.71
81	Ix_AR2	ActiveIntronRegion	0	17.31	13.92	28.42	51.74	2.07	3.59	0.36
82	Ix_SR1	SilentIntronRegion	0	8.09	4.89	12.86	20.31	0.57	1.10	0.18
83	Ix_AR1	ActiveIntronRegion	0	11.71	4.89	15.99	24.22	0.43	4.43	0.81
84	ER14a	ExonRegion	0	0.24	0.00	0.65	1.89	0.00	0.00	0.00
85	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER15a	ExonRegion	0	1.92	0.00	1.86	2.78	0.00	0.28	0.72
87	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	E15a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	ER16a	ExonRegion	0	0.00	0.00	0.00	0.90	0.00	0.49	0.00
90	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
91	ER17a	ExonRegion	0	3.17	0.00	4.11	3.38	0.00	0.28	0.80
92	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
93	ER18a	ExonRegion	0	5.84	3.73	20.28	12.92	1.02	3.00	0.84
94	E18_Da	KnownBoundary	0	6.96	7.33	33.38	16.55	1.01	1.29	0.67
95	E18_Db	KnownBoundary	0	7.26	5.70	26.30	23.30	0.00	2.79	0.89
96	ER18b	ExonRegion	0	21.77	17.41	74.96	54.87	2.97	5.72	2.25
97	ER18c	ExonRegion	0	9.38	10.57	33.06	42.85	3.28	2.28	1.86
98	IG33_SR6	SilentIntergenicRegion	0	5.28	3.43	8.06	8.46	0.24	1.72	0.36
99	IG33_AR9	ActiveIntergenicRegion	0	6.07	2.34	7.83	8.66	0.00	2.19	0.41
100	IG33_AR7	ActiveIntergenicRegion	0	1.49	1.79	6.75	11.61	0.27	0.60	0.33
101	IG33_SR4	SilentIntergenicRegion	0	1.26	2.07	6.17	13.23	0.07	1.23	0.12
102	IG33_AR6	ActiveIntergenicRegion	0	2.41	0.27	5.86	13.36	0.14	1.06	0.00
103	IG33_AR3	ActiveIntergenicRegion	0	0.68	0.65	5.72	9.51	0.00	0.43	0.14
104	IG33_AR2	ActiveIntergenicRegion	0	1.54	0.00	2.06	9.26	0.00	0.00	0.00