Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZFC3H1	Gene	0	148.83	206.86	128.97	167.33	97.57	205.81	84.84
2	308101	Transcript	1	1.63	10.79	7.14	23.75	0.00	24.00	0.00
3	378743	Transcript	0	147.24	171.83	132.36	161.09	115.78	124.30	95.22
4	ER1a	ExonRegion	1	64.23	357.04	53.34	150.00	12.26	633.57	37.18
5	E1_Da	NovelBoundary	1	15.07	49.18	9.13	9.54	1.18	57.19	2.87
6	E1a_E2a	KnownJunction	1	118.87	144.34	86.71	135.40	33.31	99.99	28.32
7	I1	Intron	1	41.25	26.15	31.56	16.47	1.61	15.56	4.14
8	I1_SR1	SilentIntronRegion	1	36.24	28.99	33.12	15.85	1.48	16.60	4.34
9	I1_AR1	ActiveIntronRegion	1	98.49	31.64	47.55	29.60	4.93	20.99	3.58
10	I1_SR2	SilentIntronRegion	1	62.15	26.99	43.74	14.68	1.11	16.01	4.61
11	I1_SR3	SilentIntronRegion	1	42.71	16.81	35.91	16.33	1.54	18.15	1.69
12	I1_AR2	ActiveIntronRegion	1	41.48	19.53	19.33	16.33	2.31	9.96	4.33
13	I1_SR4	SilentIntronRegion	0	33.43	24.41	25.58	16.61	1.31	14.53	4.08
14	E2_Aa	NovelBoundary	1	56.38	23.25	47.84	11.19	2.07	18.52	5.52
15	ER2a	ExonRegion	1	217.99	296.59	219.63	260.93	58.91	253.79	64.18
16	E2_Da	NovelBoundary	1	54.39	45.42	41.13	41.04	4.17	60.59	0.67
17	E2a_E3a	KnownJunction	1	1.87	14.84	8.77	31.21	0.00	33.12	0.00
18	E2a_E4a	KnownJunction	0	98.85	192.88	133.70	124.43	75.36	125.53	72.98
19	ER3a	ExonRegion	0	1.40	6.74	5.51	16.29	0.00	14.87	0.00
20	E3_Da	NovelBoundary	1	31.23	28.29	30.47	30.59	0.00	59.92	0.89
21	ER4a	ExonRegion	0	180.19	199.57	167.34	132.31	83.84	120.66	75.21
22	E4a_E5a	KnownJunction	0	246.88	227.17	185.91	151.28	66.76	129.36	86.49
23	E5_Aa	NovelBoundary	1	103.83	1.37	82.01	0.00	0.00	2.63	1.69
24	ER5a	ExonRegion	0	219.96	279.22	201.62	227.26	89.41	158.16	98.42
25	E5a_E6a	KnownJunction	0	195.01	241.70	205.93	185.36	134.84	134.99	97.17
26	ER6a	ExonRegion	0	183.70	241.92	183.35	207.62	111.97	147.39	96.90
27	E6a_E7a	KnownJunction	0	159.29	223.73	169.84	197.60	115.36	151.28	98.92
28	ER7a	ExonRegion	0	144.96	227.41	156.23	203.06	117.02	148.72	107.14
29	E7a_E8a	KnownJunction	0	98.94	201.29	104.39	191.10	66.92	166.64	95.50
30	ER8a	ExonRegion	0	80.33	183.64	94.90	164.69	83.70	113.86	74.95
31	E8a_E9a	KnownJunction	0	98.80	148.28	107.59	143.85	106.60	92.41	72.82
32	ER9a	ExonRegion	0	151.47	211.07	127.41	188.02	98.90	153.47	105.65
33	E9a_E10a	KnownJunction	0	184.71	228.04	139.25	199.91	162.48	178.81	118.46
34	ER10a	ExonRegion	0	130.35	184.30	108.46	153.16	85.37	125.70	87.09
35	E10a_E11a	KnownJunction	0	134.52	172.08	116.16	163.47	73.52	145.42	89.20
36	ER11a	ExonRegion	0	119.39	185.75	122.12	157.67	74.38	133.29	86.95
37	E11a_E12a	KnownJunction	0	117.33	172.66	116.92	139.00	63.51	133.60	80.61
38	I11	Intron	0	29.85	8.09	18.17	5.16	1.29	3.09	4.16
39	I11_SR1	SilentIntronRegion	0	29.95	8.11	18.23	5.18	1.29	3.10	4.17
40	ER12a	ExonRegion	0	121.87	165.22	129.05	151.71	75.06	103.26	87.03
41	E12a_E13a	KnownJunction	0	132.00	123.48	125.29	132.45	68.84	84.12	85.11
42	ER13a	ExonRegion	0	149.65	171.88	136.88	160.39	88.67	95.24	88.58
43	E13a_E14a	KnownJunction	0	240.92	190.60	183.61	189.26	93.87	114.86	99.98
44	ER14a	ExonRegion	0	193.42	175.02	169.57	157.27	90.55	107.89	85.55
45	E14a_E15a	KnownJunction	0	112.41	100.75	115.67	94.98	109.13	83.13	73.91
46	ER15a	ExonRegion	0	113.52	136.43	112.72	109.35	62.96	84.70	72.52
47	E15a_E16a	KnownJunction	0	87.91	127.52	96.44	107.06	68.84	97.36	60.15
48	ER16a	ExonRegion	0	201.75	134.49	155.07	119.75	92.11	111.01	82.88
49	E16a_E17a	KnownJunction	0	85.35	87.46	97.14	89.67	67.48	78.68	59.66
50	ER17a	ExonRegion	0	132.81	119.99	110.10	109.72	91.84	87.58	86.03
51	E17a_E18a	KnownJunction	0	92.33	140.00	86.70	108.28	83.87	114.73	79.51
52	ER18a	ExonRegion	0	145.02	170.96	121.06	149.44	103.48	120.57	86.55
53	E18a_E19a	KnownJunction	0	152.76	176.47	140.66	182.84	139.68	123.52	101.87
54	ER19a	ExonRegion	0	171.58	174.70	139.54	175.28	118.23	124.47	87.06
55	E19a_E20a	KnownJunction	0	139.14	142.00	120.75	151.41	106.67	100.23	82.26
56	ER20a	ExonRegion	0	147.95	132.01	133.13	139.60	113.11	100.95	90.42
57	E20a_E21a	KnownJunction	0	149.76	107.19	120.38	134.89	109.99	102.05	86.00
58	ER21a	ExonRegion	0	145.33	146.46	127.17	159.82	117.83	110.52	98.20
59	E21a_E22a	KnownJunction	0	175.14	169.32	149.38	153.36	145.19	87.05	112.22
60	ER22a	ExonRegion	0	221.75	183.96	154.87	188.86	157.24	116.84	106.35
61	E22a_E23a	KnownJunction	0	280.93	196.14	175.42	224.02	159.18	170.74	108.36
62	ER23a	ExonRegion	0	277.18	206.07	193.60	180.14	188.76	140.29	95.28
63	E23a_E24a	KnownJunction	0	198.21	166.27	157.73	147.43	126.10	81.31	74.80
64	ER24a	ExonRegion	0	224.39	182.56	171.46	170.42	161.76	105.86	103.53
65	E24a_E25a	KnownJunction	0	194.91	158.42	145.24	151.47	148.58	114.19	115.67
66	ER25a	ExonRegion	0	202.64	171.15	153.87	181.52	172.88	127.88	127.99
67	E25_Da	NovelBoundary	0	48.12	8.22	27.15	4.82	3.11	7.08	19.78
68	E25a_E26a	KnownJunction	0	138.74	144.83	100.94	181.84	183.32	106.74	122.79
69	E25a_E29a	NovelJunction	0	5.07	11.59	5.30	18.07	1.13	7.02	2.79
70	I25	Intron	0	34.60	14.62	18.34	6.53	4.18	7.18	10.14
71	I25_AR1	ActiveIntronRegion	0	64.92	29.23	30.20	13.41	7.17	14.65	13.20
72	I25_AR2	ActiveIntronRegion	0	63.14	18.02	26.31	11.64	6.48	17.16	12.70
73	I25_AR3	ActiveIntronRegion	0	61.65	18.09	24.84	12.19	7.92	17.16	13.04
74	I25_AR4	ActiveIntronRegion	0	58.47	18.44	23.03	12.36	8.32	12.15	12.51
75	I25_AR5	ActiveIntronRegion	0	57.75	16.56	20.96	10.57	5.58	11.68	12.46
76	E26_Aa	NovelBoundary	1	59.73	38.46	20.39	6.26	6.18	0.00	16.85
77	ER26a	ExonRegion	0	125.51	159.07	95.16	160.59	157.91	105.04	113.91
78	E26a_E27a	KnownJunction	0	88.74	165.38	107.20	174.41	115.22	109.40	112.37
79	ER27a	ExonRegion	0	170.26	161.45	150.96	201.16	156.73	127.55	137.31
80	E27_Da	NovelBoundary	0	51.77	23.62	28.55	12.41	3.37	7.93	14.17
81	E27a_E28a	KnownJunction	0	189.13	172.84	174.27	218.87	148.21	169.32	129.38
82	ER28a	ExonRegion	0	203.68	168.11	192.90	184.94	136.72	173.43	125.27
83	E28a_E29a	KnownJunction	0	155.35	160.65	154.31	162.28	171.17	169.96	112.86
84	E29_Aa	NovelBoundary	1	44.45	13.66	15.16	4.06	3.25	2.68	7.04
85	ER29a	ExonRegion	0	177.55	174.30	172.52	164.55	176.87	151.57	120.01
86	E29a_E30a	KnownJunction	0	194.70	178.36	174.37	142.04	205.45	142.07	123.95
87	E29a_E31a	NovelJunction	0	9.16	10.40	3.51	9.02	1.18	6.30	0.64
88	ER30a	ExonRegion	0	169.83	191.07	160.24	177.82	130.24	149.86	125.54
89	E30a_E31a	KnownJunction	0	113.52	193.99	117.91	179.18	116.58	123.23	102.08
90	ER31a	ExonRegion	0	160.48	174.76	161.80	165.79	154.84	143.51	125.56
91	E31_Da	NovelBoundary	0	38.44	10.09	38.97	15.50	2.19	9.33	12.18
92	E31a_E32a	KnownJunction	0	87.22	133.01	86.01	108.04	96.11	96.93	84.38
93	I31	Intron	0	43.93	23.69	36.07	14.72	6.28	13.89	12.68
94	I31_SR1	SilentIntronRegion	0	58.75	26.51	43.70	19.29	4.33	18.63	12.36
95	I31_AR1	ActiveIntronRegion	0	50.67	23.81	55.00	17.04	3.78	16.59	15.70
96	I31_AR2	ActiveIntronRegion	0	42.50	24.98	53.51	14.73	4.25	17.62	15.14
97	I31_AR3	ActiveIntronRegion	0	33.95	20.92	30.90	11.06	6.67	10.73	11.76
98	I31_AR4	ActiveIntronRegion	0	45.91	29.76	30.90	18.95	12.83	13.29	18.91
99	ER32a	ExonRegion	0	117.06	167.16	108.43	150.81	106.20	137.25	95.59
100	E32_Da	NovelBoundary	0	52.41	19.55	20.28	21.97	6.71	10.67	16.35
101	E32a_E33a	KnownJunction	0	91.98	175.13	89.07	159.81	79.37	140.73	83.52
102	I32	Intron	0	51.42	19.56	26.06	18.79	4.40	11.04	9.67
103	I32_AR1	ActiveIntronRegion	0	56.05	19.98	27.77	20.28	4.71	11.60	9.72
104	ER33a	ExonRegion	0	90.33	196.43	87.52	178.71	130.24	137.52	99.04
105	E33a_E34a	KnownJunction	0	49.90	119.25	66.51	151.55	108.30	105.00	74.45
106	ER34a	ExonRegion	0	60.48	158.05	73.58	175.95	115.24	114.78	96.03
107	E34a_E35a	KnownJunction	0	57.60	155.68	63.32	145.91	120.50	93.53	73.58
108	I34	Intron	0	32.22	23.32	22.03	11.36	3.57	21.68	12.46
109	I34_AR1	ActiveIntronRegion	0	32.42	23.47	22.16	11.43	3.59	21.81	12.54
110	ER35a	ExonRegion	0	65.22	171.12	72.06	174.04	130.28	130.68	88.24
111	E35_Da	NovelBoundary	0	72.45	54.22	32.74	24.79	8.39	22.83	23.70
112	E35a_E36a	KnownJunction	0	66.21	169.79	75.75	162.22	127.97	151.63	80.31
113	ER36a	ExonRegion	0	108.75	173.28	87.28	161.34	102.22	175.46	76.12
114	IG17_AR1	ActiveIntergenicRegion	0	1.30	2.46	1.19	1.61	0.31	13.48	1.63