Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TROAP	Gene	0	2.46	1.22	0.53	0.77	94.65	0.51	5.85
2	380327	Transcript	0	0.29	0.00	0.00	2.17	8.62	0.00	3.01
3	257909	Transcript	0	3.43	1.07	0.60	0.25	96.74	0.15	4.48
4	ER1a	ExonRegion	0	2.50	1.05	0.90	2.65	107.84	0.67	14.28
5	E1a_E2a	KnownJunction	0	0.58	2.99	0.62	4.96	46.68	3.32	21.81
6	ER2a	ExonRegion	0	2.78	1.79	0.39	1.64	52.91	0.89	16.04
7	E2a_E3a	KnownJunction	0	5.97	1.26	1.44	0.00	269.67	2.84	36.85
8	ER3a	ExonRegion	0	2.59	0.11	0.27	2.85	137.73	0.69	13.16
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	3.33	1.18	0.00	3.91
10	E3a_E5a	KnownJunction	0	3.89	0.00	0.00	0.00	31.33	0.00	1.98
11	I3	Intron	0	0.00	0.00	0.00	0.00	20.00	0.00	0.44
12	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	20.30	0.00	0.45
13	ER4a	ExonRegion	0	0.57	0.00	0.00	1.01	16.07	0.00	2.10
14	I4	Intron	0	0.00	0.77	0.43	0.00	26.63	0.00	1.71
15	I4_SR2	SilentIntronRegion	0	0.00	1.00	0.44	0.00	33.99	0.00	2.13
16	ER5a	ExonRegion	0	1.76	0.86	0.01	0.00	57.21	0.59	1.37
17	E5a_E6a	KnownJunction	0	2.07	1.63	0.00	0.00	83.77	0.00	3.10
18	ER6a	ExonRegion	0	2.91	1.68	1.43	0.00	74.17	0.68	1.76
19	E6a_E7a	KnownJunction	0	3.24	0.00	0.59	0.00	121.12	0.00	3.08
20	ER7a	ExonRegion	0	6.09	1.11	1.96	0.00	132.81	0.00	4.13
21	E7a_E8a	KnownJunction	0	10.87	0.00	4.04	0.00	138.36	0.00	3.35
22	ER8a	ExonRegion	0	7.26	0.94	2.70	0.00	137.57	0.00	6.90
23	E8a_E9a	KnownJunction	0	1.03	2.60	0.66	0.00	122.85	0.00	7.48
24	ER9a	ExonRegion	0	5.20	2.96	0.65	0.78	145.72	0.76	9.06
25	E9a_E10a	KnownJunction	0	9.36	4.10	1.52	0.00	207.25	0.00	11.48
26	ER10a	ExonRegion	0	2.69	3.15	0.23	0.00	137.37	0.72	7.05
27	E10a_E11a	KnownJunction	0	1.89	1.08	0.00	0.00	93.66	0.00	6.86
28	ER11a	ExonRegion	0	2.21	0.14	0.00	0.85	122.67	0.00	6.75
29	E11a_E12a	KnownJunction	0	2.94	0.00	0.00	1.35	92.05	0.00	6.12
30	ER12a	ExonRegion	0	1.11	0.00	0.00	0.39	79.80	0.00	4.37
31	E12_Da	NovelBoundary	0	0.00	0.00	0.00	1.68	77.43	0.00	1.46
32	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	41.70	0.00	1.49
33	E12a_E15a	NovelJunction	0	0.00	0.00	0.00	0.00	8.76	0.00	0.00
34	I12	Intron	0	0.21	0.00	0.00	0.36	34.37	0.00	0.39
35	I12_AR1	ActiveIntronRegion	0	0.28	0.00	0.00	0.49	42.24	0.00	0.53
36	I12_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	25.71	0.00	0.00
37	ER13a	ExonRegion	0	2.44	0.00	0.00	0.50	91.93	0.00	5.06
38	E13a_E14a	KnownJunction	0	2.70	0.00	0.00	1.44	67.57	0.00	3.83
39	I13	Intron	0	0.00	0.00	0.00	1.24	23.09	0.00	1.31
40	I13_SR1	SilentIntronRegion	0	0.00	0.00	0.00	1.26	23.36	0.00	1.33
41	ER14a	ExonRegion	0	1.86	1.32	0.73	0.63	105.40	0.82	3.99
42	E14a_E15a	KnownJunction	0	3.54	1.37	0.00	0.00	69.18	0.00	3.64
43	I14	Intron	0	0.00	0.00	0.31	0.35	22.02	0.00	0.75
44	I14_AR1	ActiveIntronRegion	0	0.00	0.00	0.32	0.35	22.16	0.00	0.76
45	E15_Aa	NovelBoundary	0	0.00	1.23	0.00	0.00	34.93	0.00	2.41
46	ER15a	ExonRegion	0	2.65	2.17	0.00	0.00	66.21	0.00	2.46
47	E15a_E16a	KnownJunction	0	3.44	0.00	0.00	0.00	64.87	0.00	1.66
48	ER16a	ExonRegion	0	1.12	0.58	0.00	0.00	37.08	0.00	0.44