Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHD4	Gene	0	364.31	508.94	428.62	680.54	726.80	505.85	213.83
2	309577	Transcript	0	30.10	41.63	25.25	46.06	27.82	47.22	10.45
3	357008	Transcript	0	310.73	426.73	425.62	612.94	806.57	402.40	215.85
4	IG17_AR1	ActiveIntergenicRegion	0	0.22	0.00	0.00	0.00	8.82	0.00	0.00
5	ER1a	ExonRegion	0	12.41	70.31	17.47	99.95	35.12	65.93	10.65
6	E1a_E2a	KnownJunction	0	8.40	122.29	16.66	156.61	0.92	115.21	15.11
7	ER2a	ExonRegion	0	74.33	180.90	80.48	225.77	50.62	182.34	39.63
8	E2a_E3a	KnownJunction	0	132.58	232.21	147.97	289.22	113.72	257.47	57.50
9	ER3a	ExonRegion	0	133.00	303.44	143.77	346.64	147.62	294.82	57.65
10	E3a_E4a	KnownJunction	0	123.31	213.56	112.61	313.47	80.92	181.51	45.34
11	ER4a	ExonRegion	0	201.37	388.61	223.13	452.31	337.86	368.51	101.10
12	E4a_E5a	KnownJunction	0	326.76	523.83	423.24	531.39	487.84	424.51	185.46
13	ER5a	ExonRegion	0	385.41	624.92	458.35	713.00	638.93	588.33	222.69
14	E5a_E6a	KnownJunction	0	431.37	609.94	490.37	706.64	683.72	520.21	210.76
15	ER6a	ExonRegion	0	414.33	607.07	393.00	729.52	599.61	506.95	174.22
16	E6a_E7a	KnownJunction	0	488.38	436.92	422.62	522.86	642.51	389.78	167.08
17	E6a_E8a	NovelJunction	1	7.63	2.65	6.45	11.78	0.92	17.13	0.63
18	ER7a	ExonRegion	0	318.10	509.34	386.18	590.41	487.61	402.53	160.56
19	E7a_E8a	KnownJunction	0	190.27	451.21	329.21	609.77	448.49	402.72	152.73
20	ER8a	ExonRegion	0	170.04	486.92	248.11	569.76	334.17	407.65	134.76
21	E8a_E9a	KnownJunction	0	166.25	375.84	199.13	454.59	244.45	318.60	108.49
22	ER9a	ExonRegion	0	241.80	511.78	322.06	630.94	513.20	420.91	185.12
23	E9a_E10a	KnownJunction	0	281.26	598.78	372.91	695.00	524.75	500.67	205.86
24	ER10a	ExonRegion	0	330.61	631.39	452.65	810.16	657.37	503.78	245.12
25	E10a_E11a	KnownJunction	0	290.97	583.12	406.91	714.91	481.44	450.56	212.74
26	ER11a	ExonRegion	0	246.61	458.55	339.33	659.53	497.09	419.36	192.93
27	E11a_E12a	KnownJunction	0	204.64	444.46	356.89	659.45	445.38	378.17	184.29
28	ER12a	ExonRegion	0	292.31	546.32	423.15	737.20	570.93	442.50	213.01
29	E12a_E13a	KnownJunction	0	268.89	636.08	353.45	791.76	685.52	471.97	216.81
30	ER13a	ExonRegion	0	311.44	580.61	428.93	781.03	624.06	484.56	232.87
31	E13a_E14a	KnownJunction	0	353.34	572.87	463.47	743.30	773.01	431.18	228.06
32	ER14a	ExonRegion	0	286.02	565.42	438.78	726.12	720.14	424.95	235.34
33	E14a_E15a	KnownJunction	0	318.31	560.84	493.20	749.72	746.61	399.13	246.00
34	ER15a	ExonRegion	0	330.38	524.44	467.67	659.18	679.00	400.85	212.20
35	E15a_E16a	KnownJunction	0	330.66	586.93	492.80	737.80	765.75	459.29	234.83
36	ER16a	ExonRegion	0	317.07	527.88	452.87	703.00	743.30	413.25	227.03
37	E16a_E17a	KnownJunction	0	327.97	494.95	479.27	737.85	1042.43	401.65	242.67
38	ER17a	ExonRegion	0	371.97	520.28	526.23	715.58	725.57	446.90	248.14
39	E17a_E18a	KnownJunction	0	382.10	419.24	463.85	627.16	764.34	329.74	195.67
40	ER18a	ExonRegion	0	513.49	441.08	647.91	662.19	972.47	432.67	263.63
41	E18a_E19a	KnownJunction	0	596.31	432.09	627.91	686.03	836.68	441.26	221.65
42	ER19a	ExonRegion	0	496.54	440.25	517.73	629.26	738.60	404.32	190.03
43	E19a_E20a	KnownJunction	0	483.24	373.08	471.07	501.84	681.12	326.45	183.67
44	ER20a	ExonRegion	0	374.49	496.54	438.20	600.36	777.93	351.21	224.55
45	E20a_E21a	KnownJunction	0	286.03	512.11	405.32	561.19	678.98	349.74	225.68
46	ER21a	ExonRegion	0	378.46	500.58	463.77	694.45	940.75	396.40	250.26
47	E21a_E22a	KnownJunction	0	537.42	520.12	598.78	751.07	1120.37	469.85	323.57
48	ER22a	ExonRegion	0	467.65	534.42	579.84	763.06	855.81	486.68	269.24
49	E22a_E23a	KnownJunction	0	427.55	485.86	469.68	640.62	712.79	373.88	212.36
50	E22a_E24a	NovelJunction	1	28.22	22.80	11.70	20.35	0.00	47.09	14.58
51	ER23a	ExonRegion	0	430.71	447.23	509.42	598.35	914.74	406.36	235.78
52	E23a_E24a	KnownJunction	0	320.28	383.51	421.42	522.02	663.21	347.46	185.31
53	ER24a	ExonRegion	0	354.57	443.83	421.87	590.59	785.07	456.88	216.50
54	E24a_E25a	KnownJunction	0	442.00	522.91	476.94	735.74	903.76	535.94	258.08
55	ER25a	ExonRegion	0	461.87	601.20	542.40	796.82	1019.22	557.08	267.94
56	E25a_E26a	KnownJunction	0	423.92	592.21	530.50	875.07	916.17	619.74	272.44
57	I25	Intron	1	74.74	14.01	52.21	12.52	6.52	12.96	6.44
58	I25_SR1	SilentIntronRegion	1	100.64	16.81	65.73	11.08	7.28	17.45	5.24
59	ER26a	ExonRegion	0	414.38	531.96	521.74	747.85	1024.83	502.19	240.35
60	E26_Da	KnownBoundary	0	37.00	38.59	29.36	42.07	26.56	48.91	9.06
61	E26a_E26b	KnownJunction	0	310.73	426.73	425.62	612.94	806.57	402.40	215.85
62	ER26b	ExonRegion	0	30.10	41.63	25.25	46.06	27.82	47.22	10.45
63	E26_Ab	KnownBoundary	0	33.80	46.21	24.47	53.67	18.35	41.70	6.82
64	ER26c	ExonRegion	0	326.16	510.32	456.41	758.91	858.52	489.17	232.51
65	E26b_E27a	KnownJunction	0	358.35	445.98	452.36	676.11	797.77	430.40	203.61
66	ER27a	ExonRegion	0	469.52	551.56	552.30	778.52	863.49	537.19	237.39
67	E27a_E28a	KnownJunction	0	438.66	573.11	561.45	794.53	917.41	529.91	250.28
68	ER28a	ExonRegion	0	444.95	597.28	549.96	800.81	987.83	538.30	240.77
69	E28a_E29a	KnownJunction	0	473.33	498.00	499.41	660.94	1240.20	429.81	214.15
70	E28a_E30a	NovelJunction	1	18.13	36.65	13.41	31.02	0.00	64.75	5.75
71	ER29a	ExonRegion	0	469.95	551.72	506.95	794.43	918.95	502.08	235.69
72	E29a_E30a	KnownJunction	0	499.23	525.80	419.40	812.08	952.66	509.14	221.74
73	ER30a	ExonRegion	0	589.17	668.04	570.81	933.53	1064.61	702.70	297.75
74	E30a_E31a	KnownJunction	0	606.08	748.60	468.95	957.89	796.15	735.49	236.21
75	ER31a	ExonRegion	0	782.62	783.45	737.48	1066.94	1130.88	867.33	339.95
76	E31a_E32a	KnownJunction	0	668.37	799.26	714.05	1156.17	1153.15	985.53	343.75
77	ER32a	ExonRegion	0	573.77	662.61	620.72	928.17	964.42	801.02	278.85
78	E32a_E33a	KnownJunction	0	618.08	486.78	626.06	768.44	994.15	637.81	279.74
79	ER33a	ExonRegion	0	461.97	548.79	426.24	815.37	1142.93	656.78	194.61
80	E33a_E34a	KnownJunction	0	156.99	632.09	151.75	914.84	416.10	817.23	66.38
81	ER34a	ExonRegion	0	672.13	781.41	687.25	1145.31	1291.04	1004.92	322.47
82	E34_Da	NovelBoundary	1	146.20	35.65	69.15	17.53	17.91	21.68	12.18
83	E34a_E35a	KnownJunction	0	643.76	759.80	763.14	1209.59	1294.16	1072.15	351.68
84	I34	Intron	1	79.15	17.02	34.73	7.69	6.20	17.16	5.47
85	I34_SR1	SilentIntronRegion	1	80.48	17.31	35.32	7.83	6.31	17.46	5.57
86	ER35a	ExonRegion	0	594.14	665.34	656.80	960.26	1295.07	827.14	339.53
87	E35a_E36a	KnownJunction	0	684.75	588.38	689.70	963.14	1602.15	894.60	413.98
88	ER36a	ExonRegion	0	498.39	557.67	606.58	792.30	1216.54	742.87	324.77
89	E36a_E37a	KnownJunction	0	374.19	481.14	541.37	713.23	1083.23	730.51	266.19
90	E36a_E38a	NovelJunction	0	17.57	11.27	2.87	12.22	2.19	23.93	4.44
91	ER37a	ExonRegion	0	440.55	698.91	585.45	889.61	1227.05	848.17	384.42
92	E37a_E38a	KnownJunction	0	386.99	807.29	486.69	1051.95	1020.57	932.74	379.71
93	ER38a	ExonRegion	0	473.59	757.30	551.98	1002.14	1160.58	969.32	425.96
94	E38_Da	NovelBoundary	1	154.27	8.77	145.60	3.71	5.30	4.72	5.90
95	E38a_E39a	KnownJunction	0	352.47	675.73	385.77	848.74	1077.33	826.75	256.96
96	ER39a	ExonRegion	0	262.59	324.65	240.79	467.96	449.84	489.87	111.79
97	IG16	Intergenic	0	123.35	48.63	27.44	39.77	3.32	60.19	13.84
98	IG16_SR1	SilentIntergenicRegion	0	166.70	51.68	36.17	45.28	4.75	60.27	15.21
99	IG16_AR1	ActiveIntergenicRegion	0	48.88	43.62	12.47	30.44	0.86	60.41	11.55