Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLEKHG6	Gene	0	56.55	248.87	36.91	94.25	61.83	52.42	8.44
2	11684	Transcript	0	9.62	86.71	10.32	34.81	12.98	6.88	1.90
3	396988	Transcript	0	0.99	2.73	0.00	0.00	0.55	0.00	0.75
4	304581	Transcript	0	22.96	54.58	8.36	29.95	3.05	10.03	1.78
5	ER1a	ExonRegion	0	0.75	0.47	0.69	0.17	0.07	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	1	15.28	155.18	17.02	50.10	22.33	13.16	4.78
8	E2a_E4a	KnownJunction	1	22.43	191.20	23.57	88.97	29.53	14.36	2.81
9	ER3a	ExonRegion	0	0.42	2.20	0.00	0.00	0.17	0.00	0.00
10	E3_Da	NovelBoundary	1	2.40	1.26	1.38	0.00	1.13	4.13	8.63
11	E3a_E4a	KnownJunction	0	1.55	3.26	0.00	0.00	0.92	0.00	1.50
12	ER4a	ExonRegion	0	26.17	216.86	22.16	80.16	26.57	23.38	5.80
13	E4a_E5a	KnownJunction	1	30.61	245.17	20.77	92.81	50.69	18.14	4.46
14	ER5a	ExonRegion	0	42.38	260.68	29.80	78.29	48.63	26.15	5.34
15	E5_Da	NovelBoundary	0	17.26	35.73	15.76	15.50	8.67	2.20	8.41
16	E5a_E6a	KnownJunction	1	49.20	289.20	33.53	85.07	52.51	25.30	4.10
17	E6_Aa	NovelBoundary	0	11.67	28.64	6.61	10.86	3.41	1.39	10.42
18	ER6a	ExonRegion	1	58.04	295.93	37.64	99.68	53.68	19.37	10.60
19	E6a_E7a	KnownJunction	1	56.43	258.96	33.77	80.73	49.36	20.18	3.02
20	ER7a	ExonRegion	1	65.09	308.69	49.52	95.31	64.80	25.58	7.08
21	E7a_E8a	KnownJunction	0	80.53	337.40	63.45	102.84	91.96	33.98	8.34
22	E8_Aa	NovelBoundary	0	15.67	13.27	5.86	4.14	0.00	5.63	2.78
23	ER8a	ExonRegion	1	69.76	300.79	55.61	98.63	77.02	25.20	9.88
24	E8a_E9a	KnownJunction	1	69.26	316.44	59.75	109.53	59.27	28.70	15.75
25	E8a_E10a	NovelJunction	1	1.03	18.21	0.00	0.00	0.00	0.00	0.89
26	ER9a	ExonRegion	1	97.97	415.86	67.46	135.17	98.40	32.80	12.33
27	E9a_E10a	KnownJunction	1	101.86	422.65	71.21	186.44	104.43	27.60	12.00
28	E10_Aa	NovelBoundary	0	40.29	29.16	30.42	6.07	3.23	5.55	4.17
29	ER10a	ExonRegion	1	88.84	482.99	66.50	179.06	116.12	30.04	15.03
30	E10a_E11a	KnownJunction	1	79.14	478.80	41.30	168.29	95.90	38.30	7.72
31	ER11a	ExonRegion	1	80.39	458.39	51.27	174.20	136.42	31.93	16.73
32	E11_Da	NovelBoundary	1	4.42	4.10	1.85	3.14	0.00	3.48	9.70
33	E11a_E12a	KnownJunction	1	99.61	431.77	69.98	150.49	192.28	37.95	11.65
34	E12_Aa	NovelBoundary	1	0.72	1.63	0.75	0.00	1.15	0.00	11.04
35	ER12a	ExonRegion	1	76.11	402.01	54.57	158.22	90.04	29.32	10.70
36	E12_Da	NovelBoundary	0	8.21	2.65	2.74	4.66	0.00	1.66	7.48
37	E12a_E13a	KnownJunction	1	68.45	375.08	53.27	143.15	137.16	20.72	10.96
38	I12	Intron	1	5.09	4.56	2.58	1.17	0.51	2.30	7.55
39	I12_SR1	SilentIntronRegion	1	5.14	4.60	2.59	1.18	0.51	2.31	7.61
40	ER13a	ExonRegion	1	88.41	403.69	59.86	157.48	127.50	36.40	11.33
41	E13_Da	NovelBoundary	1	12.43	36.28	7.93	26.52	0.99	4.23	2.74
42	E13a_E14a	KnownJunction	1	76.06	324.87	35.05	134.40	99.45	28.14	8.71
43	ER14a	ExonRegion	1	70.68	303.01	44.95	116.17	103.03	23.16	10.24
44	E14_Da	NovelBoundary	1	19.51	18.89	6.85	10.13	1.04	1.66	3.94
45	E14a_E16a	KnownJunction	1	35.83	224.31	30.49	89.97	95.81	17.23	6.49
46	E14a_E17a	NovelJunction	1	8.68	24.46	5.07	15.88	0.00	0.00	0.00
47	E15_Aa	NovelBoundary	1	31.13	36.96	8.75	5.45	2.79	8.63	16.62
48	ER15a	ExonRegion	1	26.42	47.26	10.05	28.60	5.10	4.62	3.55
49	E15_Da	NovelBoundary	0	25.79	19.94	11.97	7.18	3.02	8.74	12.70
50	E15a_E16a	KnownJunction	1	19.51	61.90	6.67	31.29	0.99	15.44	0.00
51	I15	Intron	1	16.08	15.66	7.06	7.56	2.70	4.12	9.14
52	I15_SR1	SilentIntronRegion	0	16.59	9.70	4.53	6.62	1.95	4.11	6.49
53	I15_AR1	ActiveIntronRegion	1	22.39	23.09	9.07	7.81	3.86	3.88	12.04
54	I15_SR2	SilentIntronRegion	1	20.53	13.23	10.90	6.96	3.23	3.90	12.12
55	I15_AR2	ActiveIntronRegion	1	15.24	14.78	6.77	3.74	4.05	6.13	20.46
56	I15_AR3	ActiveIntronRegion	1	12.06	21.07	6.02	12.61	2.66	11.98	11.99
57	I15_SR4	SilentIntronRegion	1	15.68	19.91	7.27	5.72	3.14	1.73	9.56
58	E16_Aa	NovelBoundary	0	17.81	11.59	16.08	4.12	1.91	1.23	3.05
59	ER16a	ExonRegion	1	87.20	313.03	54.37	127.74	96.76	26.50	11.09
60	E16_Da	NovelBoundary	0	10.97	11.24	4.07	0.00	1.11	2.14	8.90
61	E16a_E17a	KnownJunction	1	95.53	354.59	73.85	113.73	158.10	26.83	8.68
62	I16	Intron	1	9.94	8.13	4.48	8.33	1.51	7.52	11.88
63	I16_SR1	SilentIntronRegion	1	9.99	8.17	4.50	8.37	1.51	7.55	11.93
64	E17_Aa	NovelBoundary	1	23.13	25.01	10.89	6.47	1.01	24.39	14.50
65	ER17a	ExonRegion	0	49.09	179.12	29.37	74.71	43.07	104.40	6.33
66	E17a_E18a	KnownJunction	1	77.02	176.18	32.88	84.28	55.65	128.26	2.22
67	E18_Aa	NovelBoundary	0	11.98	10.67	5.88	10.84	0.00	2.36	8.13
68	ER18a	ExonRegion	0	65.19	166.53	32.06	75.24	52.29	115.15	10.08
69	IG4	Intergenic	0	12.47	24.67	8.00	22.77	3.29	41.68	6.84
70	IG4_SR1	SilentIntergenicRegion	0	12.54	24.83	8.04	22.90	3.31	41.94	6.88