Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NCAPD3	Gene	0	35.36	9.13	36.32	8.69	149.80	7.83	27.78
2	281189	Transcript	0	42.52	9.97	41.30	8.39	176.61	6.67	32.71
3	ER1a	ExonRegion	0	5.74	1.92	8.18	3.04	12.99	2.37	2.87
4	E1a_E2a	KnownJunction	1	7.48	4.47	20.56	2.84	14.13	0.00	11.29
5	ER2a	ExonRegion	0	21.05	9.52	39.64	6.78	64.50	3.60	18.06
6	E2a_E3a	KnownJunction	0	36.40	10.38	54.66	10.08	219.23	10.80	29.08
7	ER3a	ExonRegion	0	32.82	12.01	49.36	8.42	120.83	7.05	28.53
8	E3a_E4a	KnownJunction	0	38.60	13.50	49.68	4.90	111.05	6.19	30.64
9	ER4a	ExonRegion	0	38.07	11.78	45.29	5.66	89.01	6.20	29.39
10	E4a_E5a	KnownJunction	0	47.65	11.27	54.18	8.70	76.51	9.03	30.35
11	ER5a	ExonRegion	1	54.14	12.11	48.15	7.10	129.22	4.99	21.19
12	E5a_E6a	KnownJunction	0	45.01	9.90	48.36	8.59	210.75	3.86	22.64
13	E5a_E7a	NovelJunction	1	11.07	10.56	11.51	2.33	6.29	4.48	2.26
14	ER6a	ExonRegion	0	83.57	10.60	72.27	7.26	208.38	8.09	44.62
15	E6a_E7a	KnownJunction	0	97.27	8.07	79.58	7.34	194.38	11.79	53.71
16	ER7a	ExonRegion	0	82.91	10.63	66.04	11.27	155.78	9.36	43.05
17	E7a_E8a	KnownJunction	0	57.71	13.37	59.51	8.99	165.75	8.39	38.44
18	ER8a	ExonRegion	0	65.76	15.72	63.84	10.40	199.78	14.36	51.90
19	E8a_E9a	KnownJunction	0	47.87	11.43	38.15	7.10	107.73	6.81	30.15
20	ER9a	ExonRegion	0	41.42	8.59	41.75	6.00	120.81	5.42	34.62
21	E9a_E10a	KnownJunction	0	49.69	10.51	45.58	1.41	162.11	6.54	38.54
22	ER10a	ExonRegion	0	42.08	7.43	42.65	4.76	156.46	9.39	28.71
23	E10a_E11a	KnownJunction	0	33.33	2.78	35.02	4.74	143.34	9.51	20.91
24	ER11a	ExonRegion	0	42.38	10.74	38.92	3.98	147.80	7.39	26.05
25	E11a_E12a	KnownJunction	0	37.24	10.09	36.50	4.12	166.56	1.66	41.78
26	ER12a	ExonRegion	0	52.35	7.46	45.81	2.12	164.50	1.74	35.65
27	E12a_E13a	KnownJunction	0	54.21	5.81	44.62	4.23	191.38	2.84	25.61
28	ER13a	ExonRegion	0	48.39	7.83	50.65	2.62	203.91	3.73	29.86
29	E13a_E14a	KnownJunction	1	41.19	11.14	41.76	2.28	198.60	3.56	41.43
30	ER14a	ExonRegion	0	44.69	12.69	38.06	8.59	162.52	2.67	39.66
31	E14a_E15a	KnownJunction	0	45.63	10.77	39.95	9.54	137.86	3.08	27.03
32	ER15a	ExonRegion	0	36.46	9.21	37.06	4.80	161.14	3.75	28.16
33	E15a_E16a	KnownJunction	0	35.62	7.36	24.29	1.68	151.60	2.57	18.59
34	ER16a	ExonRegion	0	34.02	13.48	29.92	7.01	115.61	6.41	27.20
35	E16a_E17a	KnownJunction	0	43.44	11.51	36.29	7.59	112.18	8.28	28.12
36	ER17a	ExonRegion	0	33.15	10.26	35.00	6.37	131.55	5.47	30.59
37	E17a_E18a	KnownJunction	0	34.83	6.38	43.40	7.15	131.68	1.31	28.81
38	ER18a	ExonRegion	0	32.55	10.85	41.42	7.53	161.87	7.86	34.20
39	E18a_E19a	KnownJunction	0	24.45	8.51	37.92	5.47	176.19	3.06	29.91
40	ER19a	ExonRegion	0	35.60	10.37	39.42	9.10	193.92	4.26	31.12
41	E19a_E20a	KnownJunction	0	54.03	7.59	34.20	11.35	263.10	2.55	40.63
42	ER20a	ExonRegion	0	62.89	9.72	47.41	15.53	272.57	4.87	51.09
43	E20a_E21a	KnownJunction	0	55.03	13.35	52.11	5.63	202.91	4.74	41.13
44	ER21a	ExonRegion	0	56.05	11.99	41.23	12.58	248.25	6.57	50.05
45	E21a_E22a	KnownJunction	0	62.92	15.74	43.61	14.25	316.08	1.37	56.44
46	ER22a	ExonRegion	0	40.93	14.08	35.04	8.84	264.20	4.30	46.57
47	E22a_E23a	KnownJunction	1	34.92	22.57	17.42	5.36	198.55	2.84	48.57
48	ER23a	ExonRegion	0	29.45	13.09	32.39	17.37	217.36	3.82	43.79
49	E23a_E24a	KnownJunction	0	34.30	6.59	47.85	9.51	164.32	5.01	42.99
50	ER24a	ExonRegion	0	37.23	10.34	48.64	13.03	213.41	5.07	42.06
51	E24a_E25a	KnownJunction	0	42.96	12.74	32.03	16.80	147.38	5.55	22.13
52	ER25a	ExonRegion	0	52.52	12.81	51.88	11.62	202.06	8.96	32.43
53	E25a_E26a	KnownJunction	0	50.20	8.38	45.53	9.86	116.56	11.23	32.62
54	ER26a	ExonRegion	0	46.69	6.01	43.41	8.90	171.97	8.78	27.19
55	E26a_E27a	KnownJunction	0	57.46	6.25	41.60	2.71	244.48	4.77	30.38
56	ER27a	ExonRegion	0	53.31	6.54	51.70	6.02	217.61	9.62	32.16
57	E27a_E28a	KnownJunction	0	77.69	6.04	68.39	7.88	307.87	10.08	32.52
58	ER28a	ExonRegion	0	55.20	8.25	54.72	7.47	262.02	12.73	40.51
59	E28a_E29a	KnownJunction	0	39.81	6.83	41.16	6.80	247.96	3.11	37.79
60	E29_Aa	NovelBoundary	1	0.98	0.00	5.86	26.31	0.00	21.95	0.66
61	ER29a	ExonRegion	1	37.63	10.51	40.75	26.22	220.38	20.11	34.49
62	E29_Da	NovelBoundary	1	1.42	0.00	4.33	17.58	0.00	20.23	0.60
63	E29a_E30a	KnownJunction	0	25.15	15.71	34.53	12.90	215.87	7.42	38.41
64	I29	Intron	1	0.75	0.57	5.58	11.71	0.64	20.47	0.87
65	I29_AR1	ActiveIntronRegion	0	0.67	1.83	4.81	9.95	0.00	19.71	1.26
66	I29_AR2	ActiveIntronRegion	1	0.28	0.51	7.54	14.70	0.96	24.02	1.36
67	I29_SR1	SilentIntronRegion	1	0.91	0.13	5.35	11.57	0.79	19.86	0.59
68	E30_Aa	NovelBoundary	0	1.99	0.00	2.24	3.68	0.00	13.83	0.00
69	ER30a	ExonRegion	0	27.50	13.63	28.57	20.52	217.86	14.89	32.76
70	E30a_E31a	KnownJunction	0	41.49	16.63	34.98	12.84	265.52	8.04	32.16
71	E31_Aa	NovelBoundary	0	0.00	0.00	6.38	1.54	0.00	10.96	0.00
72	ER31a	ExonRegion	0	33.75	10.75	38.01	15.69	199.56	13.03	31.64
73	E31_Da	NovelBoundary	0	0.00	0.00	9.54	3.66	2.19	8.66	1.23
74	E31a_E32a	KnownJunction	0	38.12	6.65	28.50	7.96	183.13	7.08	27.59
75	E32_Aa	NovelBoundary	1	2.25	0.00	8.42	9.10	0.00	18.09	1.40
76	ER32a	ExonRegion	0	31.00	5.00	35.31	6.38	286.33	5.85	33.65
77	E32_Da	NovelBoundary	1	9.10	0.00	9.99	15.09	8.90	20.21	3.80
78	E32a_E33a	KnownJunction	0	16.12	1.52	21.22	8.15	237.05	6.62	20.79
79	I32	Intron	1	7.66	1.21	8.31	8.30	6.07	8.96	2.02
80	I32_AR1	ActiveIntronRegion	0	11.28	1.95	10.24	9.62	5.16	9.26	1.44
81	I32_SR1	SilentIntronRegion	0	10.08	1.86	9.08	6.31	5.70	8.86	2.60
82	I32_AR2	ActiveIntronRegion	1	8.86	0.73	9.38	10.08	6.98	11.11	2.06
83	I32_AR5	ActiveIntronRegion	1	2.72	0.24	5.10	10.40	6.32	8.83	2.61
84	I32_SR4	SilentIntronRegion	1	1.64	0.00	6.31	9.13	5.20	7.43	1.98
85	E33_Aa	NovelBoundary	1	0.00	1.16	13.19	10.05	2.95	6.65	3.17
86	ER33a	ExonRegion	0	31.99	6.64	34.74	10.44	197.33	9.91	27.68
87	E33_Da	NovelBoundary	1	1.49	0.00	8.39	11.16	3.04	4.88	2.36
88	E33a_E34a	KnownJunction	0	36.77	9.14	39.00	13.27	152.77	9.00	25.64
89	E34_Aa	NovelBoundary	1	0.77	0.00	16.71	18.48	2.05	10.56	0.89
90	ER34a	ExonRegion	0	29.63	13.44	26.13	10.24	163.35	7.48	27.42
91	E34_Da	NovelBoundary	0	4.09	2.34	10.92	6.61	0.97	12.33	0.00
92	E34a_E35a	KnownJunction	0	17.31	13.16	10.65	6.04	93.94	7.45	26.60
93	ER35a	ExonRegion	0	19.36	5.94	23.51	7.37	102.47	14.07	14.84
94	IG26_SR1	SilentIntergenicRegion	0	0.74	0.94	5.25	4.20	8.97	3.31	1.96
95	IG26_AR1	ActiveIntergenicRegion	0	1.06	1.13	7.36	9.60	8.39	4.73	2.92